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MutationalPatterns
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4
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1.8k
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Error in seqlevelsStyle after creating a BSgenome package
bsgenome
MutationalPatterns
4.1 years ago • updated 4.0 years ago
sibyl.bertrand
• 0
0
votes
0
replies
1.3k
views
Error in NMF estimation
MutationalPatterns
NMF
4.9 years ago
TRASA
• 0
2
votes
2
replies
975
views
MutationalPatterns Signature Database Versions
MutationalPatterns
2.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
651
views
Do you know a sofware to draw pedigrees + haplotypes?
SequencingData
STR
MutationalPatterns
pedigree
HapMap
2.7 years ago
Negar
• 0
0
votes
2
replies
588
views
could not find function "get_known_signatures"
MutationalPatterns
updated 16 months ago by
Vincent J. Carey, Jr.
6.7k • written 16 months ago by
anton.kratz
▴ 60
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Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Votes
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
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