Bioconductor OrganismDb

Showing : OrganismDb • reset

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2.7k

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OrganismDb AnnotationForge

19 months ago Ozan • 0

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2.7k

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clusterProfiler OrganismDb

updated 2.1 years ago by Guido Hooiveld ★ 4.1k • written 2.1 years ago by Aastha Kapoor • 0

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2.1k

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AnnotationForge OrganismData OrganismDb

2.5 years ago abhisek001 • 0

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annotation organismdb

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by Guido Hooiveld ★ 4.1k

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annotationhub organismdb orgdb unsupported organisms

updated 9.9 years ago by Valerie Obenchain ★ 6.8k • written 10.0 years ago by Guido Hooiveld ★ 4.1k

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3.7k

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promoter granges refseq ucsc organismdb

updated 10.1 years ago by Robert Castelo ★ 3.4k • written 10.1 years ago by efoss ▴ 10

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 11.1 years ago by dalloliogm ▴ 50 • written 11.4 years ago by Georg Otto ▴ 120

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annotationdbi annotation organismdb loadnamespace

11.2 years ago milorobertsmith • 0

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go annotation organismdb

updated 11.2 years ago by James W. MacDonald 68k • written 11.2 years ago by Guido Hooiveld ★ 4.1k

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2.8k

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organismdb annotationdbi annotationforge

updated 11.3 years ago by Marc Carlson ★ 7.2k • written 11.3 years ago by artur ▴ 80

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5.9k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 12.1 years ago by Matthias Lienhard ▴ 280 • written 12.1 years ago by Hervé Pagès 16k

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2.3k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

12.1 years ago Hervé Pagès 16k

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2.5k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

12.1 years ago Hervé Pagès 16k

13 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k

Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…

Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…

Votes

A: What is logFC and "B" in methylation analysis ??

limma moderated t-statistics and B-statistics

Comment: Guitar R package requires update due to dependency GenomicFeatures

A: how to control age and gender effect in expression data using DESeq2

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