Bioconductor OrganismDb

Showing : OrganismDb • reset

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2.5k

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OrganismDb AnnotationForge

15 months ago Ozan • 0

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2.4k

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clusterProfiler OrganismDb

updated 22 months ago by Guido Hooiveld ★ 4.1k • written 22 months ago by Aastha Kapoor • 0

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AnnotationForge OrganismData OrganismDb

2.3 years ago • updated 2.2 years ago abhisek001 • 0

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annotation organismdb

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by Guido Hooiveld ★ 4.1k

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annotationhub organismdb orgdb unsupported organisms

updated 9.7 years ago by Valerie Obenchain ★ 6.8k • written 9.7 years ago by Guido Hooiveld ★ 4.1k

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promoter granges refseq ucsc organismdb

updated 9.8 years ago by Robert Castelo ★ 3.4k • written 9.8 years ago by efoss ▴ 10

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 10.8 years ago by dalloliogm ▴ 50 • written 11.1 years ago by Georg Otto ▴ 120

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annotationdbi annotation organismdb loadnamespace

10.9 years ago milorobertsmith • 0

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go annotation organismdb

updated 10.9 years ago by James W. MacDonald 68k • written 10.9 years ago by Guido Hooiveld ★ 4.1k

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organismdb annotationdbi annotationforge

updated 11.0 years ago by Marc Carlson ★ 7.2k • written 11.0 years ago by artur ▴ 80

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 11.8 years ago by Matthias Lienhard ▴ 280 • written 11.8 years ago by Hervé Pagès 16k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

11.8 years ago Hervé Pagès 16k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

11.8 years ago Hervé Pagès 16k

13 results • Page 1 of 1

Recent ...

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Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …