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Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
22 months ago
Jamie
• 0
0
votes
3
replies
1.7k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.7 years ago by
UBod
▴ 290 • written 3.7 years ago by
matamunee
• 0
3
votes
6
replies
1.4k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.6 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.6 years ago by
lassana.a.samarakoon
▴ 10
0
votes
3
replies
1.3k
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MEDIPS - Annotation output explanation
MEDIPS
Output
6.0 years ago
vjain
• 0
2
votes
8
replies
4.2k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 6.4 years ago by
Gordon Smyth
50k • written 6.4 years ago by
harelarik
▴ 60
1
vote
1
reply
1.7k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
heikki.sarin
▴ 10
2
votes
9
replies
3.3k
views
msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
7.3 years ago
Olorin
▴ 50
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.5 years ago by
chen_hao
▴ 30 • written 7.5 years ago by
cjackson13
• 0
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.5 years ago by
Michael Love
42k • written 8.5 years ago by
amyfm
▴ 10
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Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
alex.pico
▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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