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Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.5 years ago by
Michael Love
42k • written 8.5 years ago by
amyfm
▴ 10
2
votes
8
replies
4.2k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 6.4 years ago by
Gordon Smyth
50k • written 6.4 years ago by
harelarik
▴ 60
2
votes
9
replies
3.3k
views
msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
7.3 years ago
Olorin
▴ 50
0
votes
3
replies
1.7k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.7 years ago by
UBod
▴ 290 • written 3.7 years ago by
matamunee
• 0
1
vote
1
reply
1.7k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
heikki.sarin
▴ 10
3
votes
6
replies
1.4k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.6 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.6 years ago by
lassana.a.samarakoon
▴ 10
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.5 years ago by
chen_hao
▴ 30 • written 7.5 years ago by
cjackson13
• 0
0
votes
3
replies
1.3k
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MEDIPS - Annotation output explanation
MEDIPS
Output
6.0 years ago
vjain
• 0
0
votes
2
replies
731
views
Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
22 months ago
Jamie
• 0
9 results • Page
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Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
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