Bioconductor PWM

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universalmotif scanning enrich_motifs PWM

4.1 years ago alexandre.blais ▴ 50

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pwm pfm jaspar motifdb

updated 7.1 years ago by Bioconductor Community 0 • written 7.2 years ago by chrisclarkson100 ▴ 50

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pwm motifs jaspar meme motif analysis

7.2 years ago rbronste ▴ 60

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pwm tfbstools jaspar

updated 8.4 years ago by Ge Tan ▴ 20 • written 8.4 years ago by chrisclarkson100 ▴ 50

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biostrings seqlogo pwm

updated 9.3 years ago by Marcel Ramos 700 • written 9.3 years ago by clausdkuhn • 0

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biostrings pwm

9.4 years ago Stefanie Tauber ▴ 40

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motifdb matchpwm motif pwmenrich pwm

10.2 years ago vinod.acear ▴ 50

7 results • Page 1 of 1

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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…

Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

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A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

Comment: Are transformed values from rlog /vst log2 normalized counts?

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Popular Question to Peter Hickey ▴ 760