Bioconductor PlotPCA

Showing : PlotPCA • reset

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404

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Rstudio plotPCA DESeq2

5 months ago yee • 0

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659

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plotMA ggplot2 plotPCA DESeq2

updated 7 months ago by Michael Love 42k • written 7 months ago by sara.jacobson • 0

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3.2k

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plotPCA PCA

updated 13 months ago by hediatnani • 0 • written 14 months ago by Yijing • 0

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DESeq2 plotPCA

2.3 years ago • updated 2.2 years ago synat.keam • 0

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6.5k

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plotpca DESeq2

2.4 years ago bjen731 ▴ 10

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1.4k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.0 years ago elizabethe819 • 0

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888

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DESeq2 RNASeq plotpca

updated 3.3 years ago by Michael Love 42k • written 3.3 years ago by s1760083 • 0

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1.1k

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deseq2 biplot plotpca

updated 4.3 years ago by Michael Love 42k • written 4.3 years ago by ecg1g15 ▴ 20

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628

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deseq2 plotpca

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by snp31 • 0

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653

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deseq2 PlotPCA draw.triple.venn

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by N. Perera • 0

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7.2k

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deseq2 plotpca PCa

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by lirongrossmann ▴ 80

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3.2k

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deseq2 rlog variancestabilizingtransformation plotpca pca

6.7 years ago • updated 6.6 years ago lirongrossmann ▴ 80

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3.1k

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DESeq2 plotPCA rlog transformation vsd

6.8 years ago Jane Merlevede ▴ 90

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plotPCA deseq2 labels

updated 7.4 years ago by Federico Marini ▴ 150 • written 7.4 years ago by al-ash ▴ 50

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980

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pca plotpca

7.6 years ago marianarochadesouza • 0

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1.5k

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deseq2 plotPCA PCA rna-seq

8.0 years ago newsomew13 • 0

16 results • Page 1 of 1

Recent ...

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180