Biostar PlotMA

Showing : plotMA • reset

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393

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matrixsubset DESeq2 plotMA

updated 23 months ago by Michael Love 39k • written 23 months ago by l.troxler ▴ 10

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600

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deseq2 plotMA rnaseq community analysis asymmetry

updated 3.1 years ago by Michael Love 39k • written 3.1 years ago by chaco001 • 0

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680

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agilent single channel plotMA background correction

updated 4.8 years ago by Gordon Smyth 47k • written 4.8 years ago by CantExitVIM ▴ 10

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793

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deseq2 plotMA rnaseq logfoldchange

updated 5.1 years ago by Michael Love 39k • written 5.1 years ago by ap_vc21 • 0

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1.7k

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deseq2 plotma

5.5 years ago Yvan Wenger ▴ 50

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4.2k

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rstudio r plotMA

5.8 years ago g.k • 0

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4.3k

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deseq2 rnaseq plotMA deseq rna-seq

updated 7.0 years ago by Michael Love 39k • written 7.0 years ago by sjs0282 • 0

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3.1k

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limma plotMA

updated 7.6 years ago by Gordon Smyth 47k • written 7.6 years ago by Lisa Cohen ▴ 50

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1.9k

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normalization deseq2 plotMA meanSDplot

7.6 years ago aravenscraft • 0

9 results • Page 1 of 1

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Answer: RPPA data (Proteomics analysis) by Gordon Smyth 47k

Manipulating results is easy in R and limma. Just read the examples and documentation, for example `help("topTable")`. The limma results i…

Comment: Question about filter by expression (filterByExpr) in edgeR by Gordon Smyth 47k

Something like what? I advised you to use "all treatment factors" and use the "whole design matrix" but you've done the opposite, omitting…

Comment: Full list of differential genes not obtained in topTable by Ankita • 0

thank you I tried it and it worked.

Answer: Full list of differential genes not obtained in topTable by Gordon Smyth 47k

When you have a question, the first thing you can do to help yourself is to read the help page for the function, in this case `?topTable`. …

Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth Meaning, something like the the below? filterByExpr (y)

Votes

A: Factor levels and Differential Expression analysis: Error in `contrasts<-`(`*tmp