Showing : plotMA • reset
1
vote
5
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613
views
Mixed up sample info with plotPCA
plotMA ggplot2 plotPCA DESeq2
updated 6 months ago by 41k • written 6 months ago by • 0
1
vote
1
reply
618
views
plotMA difference using or not a sub matrix
matrixsubset DESeq2 plotMA
updated 3.0 years ago by 41k • written 3.0 years ago by ▴ 10
0
votes
1
reply
882
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2 plotMA rnaseq community analysis asymmetry
updated 4.2 years ago by 41k • written 4.2 years ago by • 0
1
vote
2
replies
958
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 10
1
vote
3
replies
1.1k
views
plotMA (DESeq2) Issue
deseq2 plotMA rnaseq logfoldchange
updated 6.2 years ago by 41k • written 6.2 years ago by • 0
1
vote
8
replies
2.6k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2 plotma
6.6 years ago Yvan Wenger ▴ 50
1
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1
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4.9k
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MA plot in R
rstudio r plotMA
6.9 years ago g.k • 0
0
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2
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4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2 rnaseq plotMA deseq rna-seq
updated 8.1 years ago by 41k • written 8.1 years ago by • 0
3
votes
5
replies
3.7k
views
limma::plotMA displays one sample vs. others
limma plotMA
updated 8.7 years ago by 50k • written 8.7 years ago by ▴ 50
4
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3
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2.4k
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[DESeq2] normalization doesn't remove my mean-variance trend
normalization deseq2 plotMA meanSDplot
8.7 years ago aravenscraft • 0
10 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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