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Proxy
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reset
0
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7
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
7 weeks ago • updated 6 weeks ago
needNGS
• 0
1
vote
3
replies
4.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor
installation
proxy
BiocManager
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
chen
• 0
2
votes
1
reply
8.5k
views
Error: status was 'SSL connect error'
bioconductor
proxy
macOS
R
RStudio
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
mcall
▴ 20
2
votes
3
replies
1.6k
views
Could not access the Bioconductor repository
bioconductor
proxy
arrayexpress
updated 5.4 years ago by
James W. MacDonald
66k • written 5.4 years ago by
maxininfa
• 0
0
votes
0
replies
1.1k
views
Rjava proxy configuration ?
rJAVA
java
proxy
connectiontimeout
rdavidwebservice
8.1 years ago
Julien FOURET
• 0
19
votes
4
replies
5.5k
views
biomaRt no longer works with proxy after upgrade
biomart
proxy
rcurl
updated 8.5 years ago by
hygine
▴ 140 • written 8.5 years ago by
enricoferrero
▴ 660
6 results • Page
1 of 1
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Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
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