Bioconductor RNASeq

Showing : RNASeq • reset

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1.7k

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sgseq rnaseq

updated 1 day ago by Sara • 0 • written 6.7 years ago by Sylvain Foisy ▴ 80

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141

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 5 days ago by ATpoint ★ 4.1k • written 5 days ago by james.zhang20 • 0

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868

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clusterProfiler RNASeq

updated 13 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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168

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limma RNASeq voom

written 14 days ago by taur.vil • 0

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922

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SingleCell RNASeq RNASeqData scRNAseq

updated 19 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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213

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technicalReplicates BatchEffect limma RNASeq

17 days ago • updated 15 days ago catv • 0

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113

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 18 days ago by Michael Love 42k • written 19 days ago by 09191919 • 0

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155

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DESeq2 RNAseq

updated 12 days ago by Michael Love 42k • written 12 days ago by kcarey • 0

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140

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scRNAseq RNAseq

updated 26 days ago by ATpoint ★ 4.1k • written 28 days ago by Merav • 0

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179

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limma edgeR RNASeq

updated 18 days ago by Gordon Smyth 50k • written 19 days ago by Shaimaa Gamal • 0

10 results • Page 1 of 1

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Awards • All

Popular Question to WouterDeCoster ▴ 130

Scholar to Michael Love 42k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k