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RRBS
•
reset
4
votes
5
replies
1.3k
views
edgeR for a mixture experiment
edgeR
model-selection
RRBS
mixture-experiment
3.7 years ago
ingerslev
• 0
0
votes
2
replies
1.1k
views
MethylCC for RRBS data of Cord Blood
MethylCC
RRBS
cord blood
4.4 years ago
weichen-cls
• 0
0
votes
0
replies
921
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
4.4 years ago
i.s.castanho
• 0
0
votes
1
reply
766
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.8 years ago
i.s.castanho
• 0
5
votes
14
replies
2.4k
views
Odd P-value distribution in edgeR on RRBS data
edgeR
rrbs
updated 6.0 years ago by
Gordon Smyth
52k • written 6.0 years ago by
ingerslev
• 0
0
votes
4
replies
2.7k
views
MethylKit read in issue
methykit
rrbs
updated 6.6 years ago by
Mike Smith
★ 6.6k • written 6.6 years ago by
bekah
▴ 40
0
votes
3
replies
1.7k
views
scalability of edgeR on RRBS methylation data
edgeR
methyation
RRBS
updated 6.9 years ago by
Gordon Smyth
52k • written 6.9 years ago by
osa.zuta
▴ 40
0
votes
1
reply
1.3k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.7 years ago
l.eijssen
• 0
1
vote
4
replies
2.1k
views
Using SVA with RRBS data
sva
RRBS
updated 7.8 years ago by
Jeff Leek
▴ 650 • written 7.8 years ago by
mrodrigues.fernanda
▴ 10
0
votes
3
replies
1.9k
views
SVA package for RRBS - bisulfite methylation data
rrbs
batch effect
methylation
sva
updated 8.2 years ago by
dashbrook1
• 0 • written 9.4 years ago by
GFM
▴ 20
4
votes
2
replies
1.6k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
nhejazi
• 0
0
votes
5
replies
2.3k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
9.7 years ago • updated 9.6 years ago
maria.maqueda
• 0
12 results • Page
1 of 1
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Comment: Packages don't update, but no error or warning is thrown
by
neighsanlo
• 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc
by
Nan
• 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Answer: EuroBioC2023 abstract submission closing soon!
by
excess.gecko.shso
• 0
Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…
Answer: EuroBioC2024 abstract submission is open!
by
excess.gecko.shso
• 0
EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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