Bioconductor RRBS

Showing : RRBS • reset

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1.6k

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edgeR model-selection RRBS mixture-experiment

4.6 years ago ingerslev • 0

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1.3k

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MethylCC RRBS cord blood

5.4 years ago weichen-cls • 0

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1.1k

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Biseq Methylation DMP DMR RRBS

5.4 years ago i.s.castanho • 0

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988

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biseq betaRegression RRBS Methylation

5.7 years ago i.s.castanho • 0

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3.0k

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edgeR rrbs

updated 6.9 years ago by Gordon Smyth 53k • written 6.9 years ago by ingerslev • 0

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3.3k

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methykit rrbs

updated 7.5 years ago by Mike Smith ★ 6.6k • written 7.5 years ago by bekah ▴ 40

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2.1k

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edgeR methyation RRBS

updated 7.9 years ago by Gordon Smyth 53k • written 7.9 years ago by osa.zuta ▴ 40

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1.5k

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biseq RRBS betaregression

8.7 years ago l.eijssen • 0

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2.5k

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sva RRBS

updated 8.7 years ago by Jeff Leek ▴ 650 • written 8.7 years ago by mrodrigues.fernanda ▴ 10

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2.2k

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rrbs batch effect methylation sva

updated 9.2 years ago by dashbrook1 • 0 • written 10.4 years ago by GFM ▴ 20

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1.9k

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limma rrbs bsseq

updated 9.5 years ago by Aaron Lun ★ 29k • written 9.5 years ago by nhejazi • 0

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2.6k

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biseq RRBS SAAP-BS coverage

10.6 years ago maria.maqueda • 0

12 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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