Bioconductor RRBS

Showing : RRBS • reset

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1.2k

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edgeR model-selection RRBS mixture-experiment

3.6 years ago ingerslev • 0

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1.1k

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MethylCC RRBS cord blood

4.3 years ago weichen-cls • 0

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901

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Biseq Methylation DMP DMR RRBS

4.3 years ago i.s.castanho • 0

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753

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biseq betaRegression RRBS Methylation

4.7 years ago i.s.castanho • 0

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2.4k

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edgeR rrbs

updated 5.9 years ago by Gordon Smyth 51k • written 5.9 years ago by ingerslev • 0

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2.6k

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methykit rrbs

updated 6.5 years ago by Mike Smith ★ 6.6k • written 6.5 years ago by bekah ▴ 40

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1.7k

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edgeR methyation RRBS

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by osa.zuta ▴ 40

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1.3k

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biseq RRBS betaregression

7.6 years ago l.eijssen • 0

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2.1k

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sva RRBS

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by mrodrigues.fernanda ▴ 10

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1.9k

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rrbs batch effect methylation sva

updated 8.1 years ago by dashbrook1 • 0 • written 9.3 years ago by GFM ▴ 20

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1.6k

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limma rrbs bsseq

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.5 years ago by nhejazi • 0

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2.3k

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biseq RRBS SAAP-BS coverage

9.6 years ago maria.maqueda • 0

12 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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