Showing : RRBS • reset
4
votes
5
replies
1.6k
views
edgeR for a mixture experiment
edgeR model-selection RRBS mixture-experiment
4.6 years ago ingerslev • 0
0
votes
2
replies
1.3k
views
MethylCC for RRBS data of Cord Blood
MethylCC RRBS cord blood
5.3 years ago weichen-cls • 0
0
votes
0
replies
1.1k
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
5.3 years ago i.s.castanho • 0
0
votes
1
reply
972
views
BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
5.6 years ago i.s.castanho • 0
5
votes
14
replies
3.0k
views
Odd P-value distribution in edgeR on RRBS data
edgeR rrbs
updated 6.8 years ago by 53k • written 6.9 years ago by • 0
0
votes
4
replies
3.2k
views
MethylKit read in issue
methykit rrbs
updated 7.5 years ago by ★ 6.6k • written 7.5 years ago by ▴ 40
0
votes
3
replies
2.0k
views
scalability of edgeR on RRBS methylation data
edgeR methyation RRBS
updated 7.8 years ago by 53k • written 7.8 years ago by ▴ 40
0
votes
1
reply
1.5k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
8.6 years ago l.eijssen • 0
1
vote
4
replies
2.5k
views
Using SVA with RRBS data
sva RRBS
updated 8.7 years ago by ▴ 650 • written 8.7 years ago by ▴ 10
0
votes
3
replies
2.2k
views
SVA package for RRBS - bisulfite methylation data
rrbs batch effect methylation sva
updated 9.1 years ago by • 0 • written 10.3 years ago by ▴ 20
4
votes
2
replies
1.9k
views
Bounded Regression with Limma for RRBS?
limma rrbs bsseq
updated 9.4 years ago by ★ 29k • written 9.4 years ago by • 0
0
votes
5
replies
2.6k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
10.5 years ago maria.maqueda • 0
12 results • Page 1 of 1
Recent ...
Replies
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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