Bioconductor RStudio

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DESeq2 RSTUDIO PCAtools

updated 10 days ago by swbarnes2 ★ 1.3k • written 12 days ago by Aaliya • 0

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237

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RStudio ggkegg

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Ramirj49 • 0

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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Rstudio plotPCA DESeq2

5 months ago yee • 0

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AccNo OrgDb convert Organismname RStudio

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by j_denton • 0

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RStudio convert ensembldb NCBI

6 months ago • updated 5 months ago j_denton • 0

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error RStudio ggplot2 DESeq2

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by BioES • 0

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Rstudio scRNAseq DESeq2

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by DrFizz • 0

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scRNAseq RStudio DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by DrFizz • 0

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

10 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 with no issues at all. If you're having trouble with Bioc installa…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k