Bioconductor RStudio

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5.8k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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503

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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800

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RStudio convert ensembldb NCBI

6 months ago • updated 5 months ago j_denton • 0

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465

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AccNo OrgDb convert Organismname RStudio

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by j_denton • 0

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1.0k

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scRNAseq RStudio DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by DrFizz • 0

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344

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DESeq2 RSTUDIO PCAtools

updated 11 days ago by swbarnes2 ★ 1.3k • written 12 days ago by Aaliya • 0

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389

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Rstudio scRNAseq DESeq2

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by DrFizz • 0

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369

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Rstudio plotPCA DESeq2

5 months ago yee • 0

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1.6k

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error RStudio ggplot2 DESeq2

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by BioES • 0

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237

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RStudio ggkegg

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Ramirj49 • 0

10 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k