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RUVg
•
reset
4
votes
5
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2.6k
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Removing unwanted variation (RUV) for paired analysis ?
ruvseq
edger
ruvg
removebatcheffect
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
g.atla
▴ 10
4
votes
16
replies
7.3k
views
Normalised counts from RUVg in RUVSeq
RUVg
ruvseq
rnaseq
updated 6 weeks ago by
Shaimaa Gamal
• 0 • written 9.0 years ago by
Pauly Lin
▴ 150
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.8 years ago
anthonycolombo60
• 0
0
votes
3
replies
1.8k
views
RUVg weights in DESeq2
deseq2
ruvg
8.7 years ago
jordan.ramilowski
• 0
0
votes
1
reply
1.4k
views
Different Expression Analysis with EDASeq,DESeq2,edgeR,RUVSeq
deseq2
normalization
RUVg
edger
updated 4.7 years ago by
Michael Love
41k • written 4.7 years ago by
Yang WY
• 0
0
votes
1
reply
2.3k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 7.3 years ago by
davide risso
▴ 950 • written 7.3 years ago by
weiwsmiling
• 0
0
votes
0
replies
773
views
removing confounding batch efffect with RUVg
RUVg
RNAseq
batch effect
5.1 years ago
gtechbio
▴ 10
7 results • Page
1 of 1
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Replies
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Votes
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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