Bioconductor Repitools

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Alignment convert Repitools Alignment convert Repitools

updated 5 months ago by Marge • 0 • written 11.3 years ago by José Luis Lavín ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 12.5 years ago by Chao-Jen Wong ▴ 580 • written 12.5 years ago by Guest User ★ 13k

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GO Repitools GO Repitools

updated 10.4 years ago by Dario Strbenac ★ 1.5k • written 10.4 years ago by Tim Smith ★ 1.1k

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989

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.1 years ago Dario Strbenac ★ 1.5k

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881

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repitools

8.7 years ago Matthias Lienhard ▴ 240

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882

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Baymeth methylation MBD-seq Repitools

7.9 years ago pm2015 • 0

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repitools bioconductor cpgDensityCalc

7.0 years ago divyswar01 • 0

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repitools promoter tss annotation

6.1 years ago Ryan C. Thompson ★ 7.9k

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962

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limma Repitools limma Repitools

11.2 years ago Guest User ★ 13k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

10.2 years ago Jaritz,Markus ▴ 20

10 results • Page 1 of 1

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Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

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Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

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Scholar to Michael Love 41k

Scholar to James W. MacDonald 65k

Supporter to JKim • 0