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RiboSeq
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Inquiry on Using DESeq2 for Analyzing Differential Translation Efficiency
RiboSeq
DESeq2
written 12 weeks ago by
noi.cohen
• 0
0
votes
1
reply
804
views
How to analyze ribosome profiling data in the form of a 2x2x2 experiment using DESeq2
DESeq2
RiboSeq
RNASeq
updated 3.7 years ago by
Michael Love
42k • written 3.7 years ago by
kyusikkim
• 0
1
vote
10
replies
2.4k
views
Ribo-seq/RNA-seq analysis -- DESeq2 multi-factor design
deseq2
sequencing
ribosome profiling
riboseq
multiple factor design
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
kotcha.m
▴ 10
2
votes
0
replies
1.4k
views
Job:
PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna
riboseq
smallrna
differential gene expression
Job
6.7 years ago
Andy Lynch
▴ 120
0
votes
3
replies
1.5k
views
Error in frameCounting using riboSeqR
riboseq
R
riboseqr
7.2 years ago
yingyingguo0228
• 0
5 results • Page
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Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Comment: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
Answer: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…
Answer: Downloading Metagenomic Data with Higher Taxonomic Units
by
Levi Waldron
★ 1.1k
I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
Comment: Differene between the Wald and LRT test for time-series gene expression data
by
Denise
• 0
This makes a lot of sense, thank you very much!
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A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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