Bioconductor RnaSeq

Showing : RnaSeq • reset

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1.7k

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sgseq rnaseq

updated 1 day ago by Leonard Goldstein ▴ 200 • written 6.7 years ago by Sylvain Foisy ▴ 80

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 5 hours ago by ATpoint ★ 4.1k • written 17 hours ago by james.zhang20 • 0

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845

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clusterProfiler RNASeq

updated 8 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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148

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limma RNASeq voom

written 9 days ago by taur.vil • 0

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906

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SingleCell RNASeq RNASeqData scRNAseq

updated 14 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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192

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technicalReplicates BatchEffect limma RNASeq

13 days ago • updated 10 days ago catv • 0

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102

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 14 days ago by Michael Love 41k • written 14 days ago by 09191919 • 0

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129

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DESeq2 RNAseq

updated 7 days ago by Michael Love 41k • written 7 days ago by kcarey • 0

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133

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scRNAseq RNAseq

updated 22 days ago by ATpoint ★ 4.1k • written 24 days ago by Merav • 0

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159

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limma edgeR RNASeq

updated 13 days ago by Gordon Smyth 50k • written 14 days ago by Shaimaa Gamal • 0

10 results • Page 1 of 1

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Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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Popular Question to rohitsatyam102 ▴ 20