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limma for gene expression analysis with big and unbalanced sample size
limma
microarray
statistics
updated 23 days ago by
XW
• 0 • written 8.0 years ago by
tati6406
• 0
0
votes
0
replies
210
views
Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
3 months ago
Andy Lynch
▴ 120
0
votes
0
replies
256
views
multipollutant models
statistics
Regression
r
limma
5 months ago
Jitendra
▴ 10
0
votes
1
reply
347
views
DEseq2 : Complex design with a mixture of male and female mice
statistics
DESeq2
updated 5 months ago by
Michael Love
42k • written 6 months ago by
lionel.spinelli
• 0
25
votes
7
replies
11k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 7 months ago by
camillab.
▴ 10 • written 6.6 years ago by
Russ Fraser
▴ 30
1
vote
1
reply
375
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 8 months ago by
James W. MacDonald
66k • written 8 months ago by
Jitendra
▴ 10
6 results • Page
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Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
jovel_juan
▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Votes
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
Error when converting Seurat to SingleCellExperiment
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