Showing : SVD • reset
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error in champ.SVD
svd methylation champ
updated 19 months ago by 4.1k • written 19 months ago by • 0
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Distance between columns vs distance between rows and SVD
distance svd
22 months ago Lenny186 • 0
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Some terms in EPIC Methylation Analysis
ChAMP SVD Array Slide Sample Plate
updated 6.1 years ago by ▴ 290 • written 6.1 years ago by • 0
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SVA and proportion of variance explained
sva svd explained variance pca
updated 8.1 years ago by ▴ 650 • written 8.1 years ago by ▴ 10
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News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
8.2 years ago Yuan Tian ▴ 90
5 results • Page 1 of 1
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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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