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SVD
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error in champ.SVD
svd
methylation
champ
updated 22 months ago by
shepherl
4.1k • written 22 months ago by
Giulia
• 0
0
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0
replies
545
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Distance between columns vs distance between rows and SVD
distance
svd
2.1 years ago
Lenny186
• 0
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2
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2.2k
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Some terms in EPIC Methylation Analysis
ChAMP
SVD
Array
Slide
Sample Plate
updated 6.4 years ago by
Yuan Tian
▴ 290 • written 6.4 years ago by
yuabrahamliu
• 0
4
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5
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3.3k
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SVA and proportion of variance explained
sva
svd
explained variance
pca
updated 8.3 years ago by
Jeff Leek
▴ 650 • written 8.4 years ago by
Mattia
▴ 10
0
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reply
2.3k
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News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
8.5 years ago
Yuan Tian
▴ 90
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Dear Gordon, thank you for your answer, that's exactly what I wanted to know. Happy to see you'll make it available in the next version o…
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See https://support.bioconductor.org/p/69104/#69197, https://support.bioconductor.org/p/129755/ for testing against an average. Many other …
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Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…
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You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …
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Answer: DEseq2 design for additive treatment
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Answer: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
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