Bioconductor Salmon

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3.0k

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tximport dtu salmon TPM rnaseqDTU

written 5.1 years ago by fiona.dick91 ▴ 60

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1.6k

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salmon edgeR tximport nf-core gene_counts

updated 16 days ago by i.atanasoai • 0 • written 15 months ago by mohammedtoufiq91 ▴ 10

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1.4k

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DESeq2 tximport counts Salmon

updated 10 weeks ago by Michael Love 41k • written 16 months ago by kiqbal • 0

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1.5k

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salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 9 months ago by k.vitting.seerup ▴ 120 • written 9 months ago by elva.gypsophila ▴ 10

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2.8k

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salmon DESeq2

updated 5 months ago by bella.johnson.2022 • 0 • written 2.3 years ago by Sneha • 0

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429

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salmon tximport deseq2

updated 6 months ago by Michael Love 41k • written 6 months ago by Kayleigh • 0

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687

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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306

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swish salmon fishpond

updated 3 months ago by Michael Love 41k • written 3 months ago by Nicholas • 0

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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k

Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k