Bioconductor Segmentation

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686

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BAM Segmentation CINdex VCF Data

2.4 years ago raven1306 • 0

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994

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PureCN CNV CNA segmentation calculateTangentNormal

updated 5.1 years ago by markus.riester ▴ 130 • written 5.1 years ago by sruddy17 • 0

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969

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segmentation reference CNA TCGA

6.0 years ago jlarsen728 • 0

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classification segmentation cell types image analysis crimage

6.5 years ago Jenny.chien • 0

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1.8k

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TCGA Cancer dnacopy segmentation

updated 7.6 years ago by markus.riester ▴ 130 • written 7.6 years ago by Luisa672 • 0

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1.5k

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dnacopy segmentation CBS

updated 8.0 years ago by Venkat Seshan ▴ 30 • written 8.0 years ago by W. C. ▴ 10

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1.4k

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gcrma segmentation fault segfault

updated 8.8 years ago by James W. MacDonald 67k • written 8.8 years ago by kazi • 0

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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

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A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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