Bioconductor Segmentation

Showing : Segmentation • reset

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922

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BAM Segmentation CINdex VCF Data

3.5 years ago raven1306 • 0

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1.3k

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PureCN CNV CNA segmentation calculateTangentNormal

updated 6.2 years ago by markus.riester ▴ 130 • written 6.2 years ago by sruddy17 • 0

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1.2k

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segmentation reference CNA TCGA

7.0 years ago jlarsen728 • 0

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1.8k

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classification segmentation cell types image analysis crimage

7.5 years ago Jenny.chien • 0

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2.4k

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TCGA Cancer dnacopy segmentation

updated 8.6 years ago by markus.riester ▴ 130 • written 8.6 years ago by Luisa672 • 0

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1.8k

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dnacopy segmentation CBS

updated 9.0 years ago by Venkat Seshan ▴ 30 • written 9.0 years ago by W. C. ▴ 10

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1.7k

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gcrma segmentation fault segfault

updated 9.8 years ago by James W. MacDonald 68k • written 9.8 years ago by kazi • 0

7 results • Page 1 of 1

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Answer: Bulk RNAseq analysis for by James W. MacDonald 68k

In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…

Comment: Jobs at Ensembl by frostybuddyy • 0

I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k