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segmentation
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
23 months ago
raven1306
• 0
0
votes
1
reply
862
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 4.6 years ago by
markus.riester
▴ 130 • written 4.6 years ago by
sruddy17
• 0
0
votes
0
replies
862
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
5.5 years ago
jlarsen728
• 0
1
vote
5
replies
1.3k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
6.0 years ago
Jenny.chien
• 0
0
votes
3
replies
1.6k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 7.1 years ago by
markus.riester
▴ 130 • written 7.1 years ago by
Luisa672
• 0
1
vote
2
replies
1.4k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 7.5 years ago by
Venkat Seshan
▴ 30 • written 7.5 years ago by
W. C.
▴ 10
0
votes
2
replies
1.2k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 8.3 years ago by
James W. MacDonald
66k • written 8.3 years ago by
kazi
• 0
7 results • Page
1 of 1
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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