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segmentation
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
2.8 years ago
raven1306
• 0
0
votes
1
reply
1.1k
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 5.4 years ago by
markus.riester
▴ 130 • written 5.4 years ago by
sruddy17
• 0
0
votes
0
replies
1.0k
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
6.3 years ago
jlarsen728
• 0
1
vote
5
replies
1.5k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
6.8 years ago
Jenny.chien
• 0
0
votes
3
replies
2.0k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 7.9 years ago by
markus.riester
▴ 130 • written 7.9 years ago by
Luisa672
• 0
1
vote
2
replies
1.6k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 8.3 years ago by
Venkat Seshan
▴ 30 • written 8.3 years ago by
W. C.
▴ 10
0
votes
2
replies
1.5k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 9.1 years ago by
James W. MacDonald
68k • written 9.1 years ago by
kazi
• 0
7 results • Page
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Comment: Heatmap of rnaseq data with z-score scale
by
Paul Harrison
▴ 110
There can be considerable differences between datasets just due to different handling, sequencing method, batch effects, etc etc, and this …
Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
by
ATpoint
★ 4.8k
What is lac cells? You mean 7000-9000 cells? Please check first that the function runs OOM even without any of these multicore options set.…
Comment: parameters of filterByExpr
by
caroline.zanchi
▴ 10
It worked, I think I finally understand and accept that fact. Sorry and thank you again !
Comment: parameters of filterByExpr
by
Gordon Smyth
52k
You seem to be coming back to the same fixed (but incorrect) idea of what filterByExpr() should be doing. I have tried to explain that filt…
Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi
by
Gordon Smyth
52k
modelMatrixMeth() works correctly. The second replicate factor has not been lost. Please do not make ad hoc manual modifications to the de…
Votes
Comment: Heatmap of rnaseq data with z-score scale
Answer: parameters of filterByExpr
Comment: Heatmap of rnaseq data with z-score scale
Answer: LogFC values in edgeR - w/wo intercept
How to formulate 2 factor nested design in DESeq2
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