Showing : Cancer • reset
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125
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
cancer australia wehi
3 months ago Gordon Smyth 43k
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0
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109
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
4 months ago Daniel Brewer ▴ 90
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0
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160
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
7 months ago Daniel Brewer ▴ 90
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0
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183
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Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
9 months ago Daniel Brewer ▴ 90
2
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13
replies
283
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 10 months ago by 33k • written 10 months ago by • 0
4
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7
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290
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Limma sample groups
microarray limma affy cancer
updated 10 months ago by 43k • written 10 months ago by • 0
0
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5
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252
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TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 10 months ago by 3.2k • written 10 months ago by ▴ 10
1
vote
5
replies
280
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TCGA: clinical data and expression data
microarray annotation cancer
updated 10 months ago by 3.2k • written 10 months ago by • 0
0
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5
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262
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 11 months ago by 33k • written 11 months ago by • 0
0
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0
replies
183
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
17 months ago • updated 13 months ago Daniel Brewer ▴ 90
4
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10
replies
388
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how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 14 months ago by 3.2k • written 14 months ago by ▴ 10
1
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2
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136
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Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 15 months ago by 3.2k • written 16 months ago by • 0
0
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3
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180
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 15 months ago by 2.8k • written 15 months ago by • 0
0
votes
1
reply
148
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 16 months ago by ★ 2.6k • written 16 months ago by • 0
0
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0
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256
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
17 months ago Shamith.Samarajiwa ▴ 180
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0
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166
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
17 months ago Patrick Kimes ▴ 10
0
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0
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282
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Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
20 months ago • updated 19 months ago marschaefer • 0
0
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0
replies
153
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
19 months ago luciomora8 • 0
0
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0
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212
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
20 months ago Daniel Brewer ▴ 90
2
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2
replies
238
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 20 months ago by 33k • written 20 months ago by • 0
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0
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132
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miRNA and drugs
cancer
20 months ago maria.k.pagoni • 0
1
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0
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274
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
22 months ago • updated 21 months ago Shamith.Samarajiwa ▴ 180
1
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0
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341
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
22 months ago • updated 21 months ago Shamith.Samarajiwa ▴ 180
0
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0
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328
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
21 months ago Johannes Rainer ★ 1.9k
1
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4
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313
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 22 months ago by ▴ 100 • written 22 months ago by • 0
2
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1
reply
596
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 22 months ago by ▴ 780 • written 22 months ago by ▴ 10
0
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0
replies
219
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Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
22 months ago Shamith.Samarajiwa ▴ 180
0
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0
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276
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
22 months ago sheneicechang • 0
0
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0
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180
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
22 months ago Ning Leng • 0
0
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5
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617
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
2.0 years ago mah19 • 0
0
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0
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170
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MatchGenes in Bumphunter - result list with multiple genes
cancer
2.1 years ago hanna_engqvist • 0
1
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0
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783
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
2.3 years ago • updated 2.2 years ago Shamith.Samarajiwa ▴ 180
0
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0
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243
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
2.2 years ago jmaanaki • 0
0
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2
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218
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Chromosomal location mapping for miRNAs
cancer
updated 2.2 years ago by 57k • written 2.2 years ago by ▴ 10
0
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3
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275
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Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 2.2 years ago by 33k • written 2.2 years ago by • 0
1
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4
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316
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 2.2 years ago by 33k • written 2.2 years ago by • 0
3
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1
reply
3.0k
views
WGCNA-unable to install GO.db package
go cancer
updated 2.3 years ago by 25k • written 2.3 years ago by ▴ 20
0
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1
reply
231
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Help installing netReg
netReg cancer
2.3 years ago sbrackett007 • 0
2
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4
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430
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SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
2.3 years ago s.goncalvesclaro ▴ 10
0
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0
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311
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
2.3 years ago Shamith.Samarajiwa ▴ 180
0
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0
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443
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Job: Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer multi-omics genomic instability machine learning data integration Job
2.3 years ago msecrier ▴ 20
6
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7
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463
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Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 2.4 years ago by ▴ 800 • written 2.4 years ago by ▴ 30
0
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1
reply
253
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Getting a signature specific to each patient
DESeq2 r cancer
updated 2.4 years ago by 57k • written 2.4 years ago by ▴ 30
0
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0
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277
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Job: Postdoctoral Research Fellowship: Computational Biology & Cancer Immunotherapy
cancer Job
2.4 years ago luznile • 0
0
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2
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1.1k
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Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 2.4 years ago by 25k • written 2.4 years ago by • 0
2
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0
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400
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Job: Research Fellow, Computational Cancer Genomics (University College London)
cancer genomics machine learning data integration multi-omics Job
2.5 years ago msecrier ▴ 20
2
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5
replies
566
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edgeR or wilcoxon rank test? Which is right?
edgeR r wilcox RNA-seq cancer
2.5 years ago Fereshteh ▴ 30
2
votes
3
replies
399
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Batch correction for a sets of genes
cancer deseq2 r rnaseq
updated 2.5 years ago by 33k • written 2.5 years ago by ▴ 30
0
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1
reply
505
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Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 2.6 years ago by 57k • written 2.6 years ago by • 0
0
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2
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899
views
Solexa fastq files and BLAT
Cancer Biostrings ShortRead Cancer Biostrings ShortRead
updated 2.6 years ago by 0 • written 12.6 years ago by ★ 1.9k
50 results • Page 1 of 1
Recent ...
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Comment: Problems with installation of 'phyloseq by shepherl 2.8k
GenomeInfoDbData is a Bioconductor package. Please use Bioconductor installation `BiocManager::install("GenomeInfoDbData")` and report an…
Comment: Permission denied when manually installing R packages(Rhdf5lib) by Mike Smith ★ 5.0k
Did you resolve this, as you seem to have gotten further in https://support.bioconductor.org/p/9138736/ ?
Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Mike Smith ★ 5.0k
On my Ubuntu system the `iostreams.h` header is provided by the package `libstdc++9-dev`. However that package is a dependency of `g++9` a…
Comment: Compilation fatal error: iostream.h: No such file or directory when installing R by Mike Smith ★ 5.0k
No you don't need to install HDF5 via Ubuntu. The Rhdf5lib package is essentially doing this, and is designed to provide a consistent vers…
Comment: derfinder model.matrix with limma or single base-level F-statistics analysis by Konstantinos Yeles ▴ 60
Dear Leonardo, in the section ***"6.1.2 Find DERs with limma"*** of the derfinder vignette it is explained how to perform an analysis in t…
Votes
Answer: derfinder model.matrix with limma or single base-level F-statistics analysis
A: DESeq2: multiple conditions design -- How to select subset comparisons from the
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
A: Normalized counts of DESeq2 affected by design formula?
A: Finding orthologous human/mouse ENSEMBL IDs
Awards • All
Popular Question to svlachavas ▴ 780
Popular Question to Hina Bandukwala • 0
Scholar to Leonardo Collado Torres ▴ 900
Popular Question to Bogdan ▴ 620
Popular Question to Gordon Smyth 43k
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