Showing : Cancer • reset
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
10 weeks ago DKFZ International PhD Program ▴ 10
1
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0
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212
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
6 months ago Andy Lynch ▴ 120
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195
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Calculating tumour purity having only CNA data
PureCN CNA purity cancer
7 months ago JAcky • 0
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0
replies
213
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
7 months ago Sarah • 0
0
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1
reply
874
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 18.9 years ago by ▴ 810
1
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268
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
9 months ago DKFZ International PhD Program ▴ 10
0
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1
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9.5k
views
heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
updated 11 months ago by • 0 • written 9.2 years ago by ▴ 10
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1
reply
360
views
WGCNA
Cancer
updated 14 months ago by ▴ 540 • written 14 months ago by • 0
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0
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450
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
21 months ago • updated 17 months ago Gordon Smyth 47k
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423
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
22 months ago Daniel Brewer ▴ 90
0
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0
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502
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
2.1 years ago Daniel Brewer ▴ 90
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0
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572
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Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
2.3 years ago Daniel Brewer ▴ 90
2
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13
replies
659
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Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 2.3 years ago by 39k • written 2.3 years ago by • 0
4
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7
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855
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Limma sample groups
microarray limma affy cancer
updated 2.4 years ago by 47k • written 2.4 years ago by • 0
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5
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945
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TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 2.4 years ago by 3.7k • written 2.4 years ago by ▴ 10
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5
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1.0k
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TCGA: clinical data and expression data
microarray annotation cancer
updated 2.4 years ago by 3.7k • written 2.4 years ago by • 0
0
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5
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908
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Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 2.4 years ago by 39k • written 2.4 years ago by • 0
0
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0
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417
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
3.0 years ago • updated 2.6 years ago Daniel Brewer ▴ 90
4
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10
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1.4k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 2.7 years ago by 3.7k • written 2.7 years ago by ▴ 10
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2
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1.7k
views
Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 2.8 years ago by 3.7k • written 2.8 years ago by • 0
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3
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657
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 2.8 years ago by 3.4k • written 2.8 years ago by • 0
0
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1
reply
449
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 2.9 years ago by ★ 2.7k • written 2.9 years ago by • 0
0
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0
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565
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
3.0 years ago • updated 2.9 years ago Shamith.Samarajiwa ▴ 180
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455
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
2.9 years ago Patrick Kimes ▴ 10
0
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0
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547
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Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
3.2 years ago • updated 3.1 years ago marschaefer • 0
0
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0
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368
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
3.1 years ago luciomora8 • 0
0
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0
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486
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
3.2 years ago Daniel Brewer ▴ 90
2
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2
replies
536
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 3.2 years ago by 39k • written 3.2 years ago by • 0
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292
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miRNA and drugs
cancer
3.2 years ago maria.k.pagoni • 0
1
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562
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
3.3 years ago Shamith.Samarajiwa ▴ 180
1
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0
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604
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
3.4 years ago • updated 3.3 years ago Shamith.Samarajiwa ▴ 180
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557
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
3.3 years ago Johannes Rainer ★ 2.0k
1
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4
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690
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 3.3 years ago by ▴ 120 • written 3.3 years ago by • 0
2
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1
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1.6k
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 3.3 years ago by ▴ 800 • written 3.3 years ago by ▴ 10
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0
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450
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Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
3.3 years ago Shamith.Samarajiwa ▴ 180
0
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0
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550
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
3.4 years ago sheneicechang • 0
0
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0
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389
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
3.4 years ago Ning Leng • 0
0
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5
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1.1k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
3.6 years ago mah19 • 0
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0
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423
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MatchGenes in Bumphunter - result list with multiple genes
cancer
3.6 years ago hanna_engqvist • 0
1
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0
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1.1k
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
3.8 years ago • updated 3.7 years ago Shamith.Samarajiwa ▴ 180
0
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475
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
3.7 years ago jmaanaki • 0
0
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2
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546
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Chromosomal location mapping for miRNAs
cancer
updated 3.7 years ago by 62k • written 3.7 years ago by ▴ 10
0
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3
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580
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Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 3.7 years ago by 39k • written 3.7 years ago by • 0
1
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4
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569
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 3.7 years ago by 39k • written 3.7 years ago by • 0
4
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1
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5.7k
views
WGCNA-unable to install GO.db package
go cancer
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 20
0
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1
reply
439
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Help installing netReg
netReg cancer
3.8 years ago sbrackett007 • 0
2
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4
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776
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SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
3.8 years ago s.goncalvesclaro ▴ 10
0
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0
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535
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
3.8 years ago Shamith.Samarajiwa ▴ 180
0
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0
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709
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Job: Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer multi-omics genomic instability machine learning data integration Job
3.8 years ago msecrier ▴ 20
6
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7
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732
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Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 3.9 years ago by ★ 1.2k • written 3.9 years ago by ▴ 30
50 results • Page 1 of 1
Recent ...
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Answer: struggling to create a heatmap by ATpoint ★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta by Michael Love 39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it by ATpoint ★ 2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2? by ATpoint ★ 2.1k
You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…
Answer: Which genes are outliers in DESeq2? by Michael Love 39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
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Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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