Showing : Cancer • reset
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WGCNA
Cancer
updated 9 weeks ago by ▴ 160 • written 9 weeks ago by • 0
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0
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248
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
8 months ago • updated 4 months ago Gordon Smyth 44k
0
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0
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223
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
10 months ago Daniel Brewer ▴ 90
0
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0
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307
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
13 months ago Daniel Brewer ▴ 90
0
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0
replies
334
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
15 months ago Daniel Brewer ▴ 90
2
votes
13
replies
433
views
Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 15 months ago by 35k • written 15 months ago by • 0
4
votes
7
replies
515
views
Limma sample groups
microarray limma affy cancer
updated 15 months ago by 44k • written 15 months ago by • 0
0
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5
replies
405
views
TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 16 months ago by 3.4k • written 16 months ago by ▴ 10
1
vote
5
replies
473
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 16 months ago by 3.4k • written 16 months ago by • 0
0
votes
5
replies
443
views
Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 16 months ago by 35k • written 16 months ago by • 0
0
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0
replies
273
views
Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
23 months ago • updated 19 months ago Daniel Brewer ▴ 90
4
votes
10
replies
667
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 20 months ago by 3.4k • written 20 months ago by ▴ 10
1
vote
2
replies
389
views
Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 21 months ago by 3.4k • written 21 months ago by • 0
0
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3
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253
views
Topgo, Deseq and KEGG pathway
annotation cancer
updated 21 months ago by 2.9k • written 21 months ago by • 0
0
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1
reply
240
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 22 months ago by ★ 2.6k • written 22 months ago by • 0
0
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0
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355
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
23 months ago Shamith.Samarajiwa ▴ 180
0
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0
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265
views
Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
23 months ago Patrick Kimes ▴ 10
0
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0
replies
373
views
Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
2.2 years ago • updated 2.0 years ago marschaefer • 0
0
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0
replies
224
views
Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
2.0 years ago luciomora8 • 0
0
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0
replies
296
views
Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
2.2 years ago Daniel Brewer ▴ 90
2
votes
2
replies
314
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 2.2 years ago by 35k • written 2.2 years ago by • 0
0
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0
replies
179
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miRNA and drugs
cancer
2.2 years ago maria.k.pagoni • 0
1
vote
0
replies
368
views
Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
2.3 years ago Shamith.Samarajiwa ▴ 180
1
vote
0
replies
426
views
Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
2.3 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
412
views
Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
2.3 years ago Johannes Rainer ★ 1.9k
1
vote
4
replies
443
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 2.3 years ago by ▴ 100 • written 2.3 years ago by • 0
2
votes
1
reply
916
views
How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by ▴ 10
0
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0
replies
299
views
Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
2.3 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
370
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
2.3 years ago sheneicechang • 0
0
votes
0
replies
245
views
News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
2.3 years ago Ning Leng • 0
0
votes
5
replies
785
views
RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
2.5 years ago mah19 • 0
0
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0
replies
242
views
MatchGenes in Bumphunter - result list with multiple genes
cancer
2.5 years ago hanna_engqvist • 0
1
vote
0
replies
909
views
Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
2.7 years ago • updated 2.6 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
319
views
Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
2.6 years ago jmaanaki • 0
0
votes
2
replies
295
views
Chromosomal location mapping for miRNAs
cancer
updated 2.6 years ago by 58k • written 2.7 years ago by ▴ 10
0
votes
3
replies
338
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 2.7 years ago by 35k • written 2.7 years ago by • 0
1
vote
4
replies
410
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 2.7 years ago by 35k • written 2.7 years ago by • 0
4
votes
1
reply
3.8k
views
WGCNA-unable to install GO.db package
go cancer
updated 2.7 years ago by 25k • written 2.7 years ago by ▴ 20
0
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1
reply
298
views
Help installing netReg
netReg cancer
2.8 years ago sbrackett007 • 0
2
votes
4
replies
550
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
2.8 years ago s.goncalvesclaro ▴ 10
0
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0
replies
388
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
2.8 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
526
views
Job: Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer multi-omics genomic instability machine learning data integration Job
2.8 years ago msecrier ▴ 20
6
votes
7
replies
556
views
Appropriate experimental design for differential expresion
edgeR normalization cancer
updated 2.8 years ago by ▴ 970 • written 2.8 years ago by ▴ 30
0
votes
1
reply
312
views
Getting a signature specific to each patient
DESeq2 r cancer
updated 2.9 years ago by 58k • written 2.9 years ago by ▴ 30
0
votes
0
replies
366
views
Job: Postdoctoral Research Fellowship: Computational Biology & Cancer Immunotherapy
cancer Job
2.9 years ago luznile • 0
0
votes
2
replies
1.5k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 2.9 years ago by 25k • written 2.9 years ago by • 0
2
votes
0
replies
475
views
Job: Research Fellow, Computational Cancer Genomics (University College London)
cancer genomics machine learning data integration multi-omics Job
3.0 years ago msecrier ▴ 20
2
votes
5
replies
693
views
edgeR or wilcoxon rank test? Which is right?
edgeR r wilcox RNA-seq cancer
3.0 years ago AZ ▴ 30
2
votes
3
replies
474
views
Batch correction for a sets of genes
cancer deseq2 r rnaseq
updated 3.0 years ago by 35k • written 3.0 years ago by ▴ 30
0
votes
1
reply
598
views
Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 3.0 years ago by 58k • written 3.0 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Trying to follow a gene set analyisis in R by Michael Love 35k
It looks like you only have a single sample.
Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0
I get the following > design = model.matrix(~ es$condition) > design (Intercept) es$conditiondex4 attr(,"assign") [1] 0 1 attr(,"co…
Comment: How to use subjunc for differential splicing analysis? by Yang Liao ▴ 280
Annotation to the *subjunc* aligner helps the aligner to better map the reads. The aligner generates BAM files, which contains mapped reads…
Answer: universalmotif, question about enrich_motifs function and number of hits returne by btremblay ▴ 30
Hi, After doing some digging I've isolated the issue to being related to the threshold calculation which you request with the `threshold…
Answer: DE analysis model matrix for paired samples by Michael Love 35k
Agree with swbarnes2. It just seems like the condition effect is very small. Also I'd double check the metadata. Sometimes samples are swap…
Votes
A: DNAcopy
Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
Answer: How to use subjunc for differential splicing analysis?
Answer: catchKallisto results are not counts
Answer: catchKallisto results are not counts
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