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Cancer
•
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0
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0
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118
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Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer
bioinformatics
proteomics
genomics
phd
10 weeks ago
DKFZ International PhD Program
▴ 10
1
vote
0
replies
212
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
6 months ago
Andy Lynch
▴ 120
0
votes
0
replies
195
views
Calculating tumour purity having only CNA data
PureCN
CNA
purity
cancer
7 months ago
JAcky
• 0
0
votes
0
replies
213
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
7 months ago
Sarah
• 0
0
votes
1
reply
874
views
An ESR essay about software design, and how it applies to Bioconductor
GUI
Cancer
GUI
Cancer
written 18.9 years ago by
A.J. Rossini
▴ 810
1
vote
0
replies
268
views
Job:
PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd
cancer
genomics
proteomics
bioinformatics
9 months ago
DKFZ International PhD Program
▴ 10
0
votes
1
reply
9.5k
views
heatmap.2 - change column & row locations; angle / rotate
Cancer
Cancer
updated 11 months ago by
lekicoj188
• 0 • written 9.2 years ago by
Cheng, Yong-Sheng
▴ 10
0
votes
1
reply
360
views
WGCNA
Cancer
updated 14 months ago by
Basti
▴ 540 • written 14 months ago by
aikaterinilama
• 0
0
votes
0
replies
450
views
Job:
Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia
cancer
wehi
21 months ago • updated 17 months ago
Gordon Smyth
47k
0
votes
0
replies
423
views
Job:
Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer
postdoc
biomarkers
Biobase
22 months ago
Daniel Brewer
▴ 90
0
votes
0
replies
502
views
Job:
Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase
bioinformatics
biomarkers
cancer
2.1 years ago
Daniel Brewer
▴ 90
0
votes
0
replies
572
views
Job:
Postdoctoral Data Scientist @ Oxford University, UK
Cancer
CancerSubtypes
postdoc
2.3 years ago
Daniel Brewer
▴ 90
2
votes
13
replies
659
views
Sample size imbalance in a multi-regional experiment
deseq2
cancer
updated 2.3 years ago by
Michael Love
39k • written 2.3 years ago by
bioconductor_user_1675
• 0
4
votes
7
replies
855
views
Limma sample groups
microarray
limma
affy
cancer
updated 2.4 years ago by
Gordon Smyth
47k • written 2.4 years ago by
nancy.nassar1590
• 0
0
votes
5
replies
945
views
TCGA: to extract clinical data from barcode
cancer
TCGAbiolinks
updated 2.4 years ago by
Kevin Blighe
3.7k • written 2.4 years ago by
Marie DENIS
▴ 10
1
vote
5
replies
1.0k
views
TCGA: clinical data and expression data
microarray
annotation
cancer
updated 2.4 years ago by
Kevin Blighe
3.7k • written 2.4 years ago by
641549298
• 0
0
votes
5
replies
908
views
Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2
cancer
updated 2.4 years ago by
Michael Love
39k • written 2.4 years ago by
rezashiralmohammad
• 0
0
votes
0
replies
417
views
Job:
Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer
nextgenerationsequencing
prostate
Job
3.0 years ago • updated 2.6 years ago
Daniel Brewer
▴ 90
4
votes
10
replies
1.4k
views
how to analyze WGCNA results?
cancer
probe
deseq2
annotation
normalization
updated 2.7 years ago by
Kevin Blighe
3.7k • written 2.7 years ago by
rajpal22288
▴ 10
1
vote
2
replies
1.7k
views
Partial NA coefficients for 10 probe(s) Limma
limma
microarray
cancer
updated 2.8 years ago by
Kevin Blighe
3.7k • written 2.8 years ago by
everardoremi
• 0
0
votes
3
replies
657
views
Topgo, Deseq and KEGG pathway
annotation
cancer
updated 2.8 years ago by
shepherl
3.4k • written 2.8 years ago by
Nas 1989
• 0
0
votes
1
reply
449
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 2.9 years ago by
Peter Langfelder
★ 2.7k • written 2.9 years ago by
sagigordon
• 0
0
votes
0
replies
565
views
Job:
Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer
computational biology
bioinformatics
epigenetics
Job
3.0 years ago • updated 2.9 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
455
views
Job:
Data Sciences Statistician - Dana-Farber Cancer Institute
job
data science
biostatistics
bioinformatics
cancer
Job
2.9 years ago
Patrick Kimes
▴ 10
0
votes
0
replies
547
views
Job:
postdoc position in computational cancer biology in Milan, Italy
cancer
networks
genomics
epigenomics
Job
3.2 years ago • updated 3.1 years ago
marschaefer
• 0
0
votes
0
replies
368
views
Methylmix results are a bit different from beta values results
cancer
methylmix
methylation
betavalues
DMvalues
3.1 years ago
luciomora8
• 0
0
votes
0
replies
486
views
Job:
Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer
biomarkers
bioinformatician
Job
3.2 years ago
Daniel Brewer
▴ 90
2
votes
2
replies
536
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2
cancer
updated 3.2 years ago by
Michael Love
39k • written 3.2 years ago by
thanos5541
• 0
0
votes
0
replies
292
views
miRNA and drugs
cancer
3.2 years ago
maria.k.pagoni
• 0
1
vote
0
replies
562
views
Job:
PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer
genomics
deep learning
computational biology
Job
3.3 years ago
Shamith.Samarajiwa
▴ 180
1
vote
0
replies
604
views
Job:
Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning
cancer
immunotherapy
computational biology
Job
3.4 years ago • updated 3.3 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
557
views
Job:
Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer
Job
3.3 years ago
Johannes Rainer
★ 2.0k
1
vote
4
replies
690
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 3.3 years ago by
k.vitting.seerup
▴ 120 • written 3.3 years ago by
asmita
• 0
2
votes
1
reply
1.6k
views
How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer
limma
deseq2
updated 3.3 years ago by
svlachavas
▴ 800 • written 3.3 years ago by
KCLiv
▴ 10
0
votes
0
replies
450
views
Job:
Bioinformatician @ University of Cambridge
cancer
bioinformatics
R
Job
3.3 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
550
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
3.4 years ago
sheneicechang
• 0
0
votes
0
replies
389
views
News:
Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer
meetup
News
3.4 years ago
Ning Leng
• 0
0
votes
5
replies
1.1k
views
RNA-seq time course analysis with only one experimental condition
deseq2
cancer
rna-seq
time-series
3.6 years ago
mah19
• 0
0
votes
0
replies
423
views
MatchGenes in Bumphunter - result list with multiple genes
cancer
3.6 years ago
hanna_engqvist
• 0
1
vote
0
replies
1.1k
views
Job:
Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer
deep learning
genomics
Job
3.8 years ago • updated 3.7 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
475
views
Job:
Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell
genome
cancer
Job
3.7 years ago
jmaanaki
• 0
0
votes
2
replies
546
views
Chromosomal location mapping for miRNAs
cancer
updated 3.7 years ago by
James W. MacDonald
62k • written 3.7 years ago by
angajalaanusha
▴ 10
0
votes
3
replies
580
views
Is Background Correction necessary before DESeq analysis
deseq2
cancer
updated 3.7 years ago by
Michael Love
39k • written 3.7 years ago by
vivekr
• 0
1
vote
4
replies
569
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2
cancer
updated 3.7 years ago by
Michael Love
39k • written 3.7 years ago by
xuyao15927402897
• 0
4
votes
1
reply
5.7k
views
WGCNA-unable to install GO.db package
go
cancer
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
852108577
▴ 20
0
votes
1
reply
439
views
Help installing netReg
netReg
cancer
3.8 years ago
sbrackett007
• 0
2
votes
4
replies
776
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC
probe
normalization
GEOdata
cancer
3.8 years ago
s.goncalvesclaro
▴ 10
0
votes
0
replies
535
views
Job:
Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R
Python
Computational-Biology
Cancer
Job
3.8 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
709
views
Job:
Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer
multi-omics
genomic instability
machine learning
data integration
Job
3.8 years ago
msecrier
▴ 20
6
votes
7
replies
732
views
Appropriate experimental design for differential expresion
edgeR
normalization
cancer
updated 3.9 years ago by
swbarnes2
★ 1.2k • written 3.9 years ago by
AZ
▴ 30
50 results • Page
1 of 1
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Answer: struggling to create a heatmap
by
ATpoint
★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★ 2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
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You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
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Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
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Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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