Showing : Seqnames • reset
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4.4k
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Grange object subsetting using seqnames
Seqnames makeGRangesFromDataFrame GRanges Subsetting GenomicRanges
4.3 years ago rtrivedi1 ▴ 10
2
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1
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1.1k
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset dnastringsetlist seqnames
6.9 years ago s.ghignone ▴ 10
0
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1
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1.3k
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GenomeInfoDb: where are the genome patches?
seqnames genomeinfodb
updated 8.4 years ago by 16k • written 8.4 years ago by ▴ 10
0
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2
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2.3k
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GenomicRanges: `seqnames<-` can not work as expected
genomicranges seqnames factor
8.9 years ago wcstcyx ▴ 30
0
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1
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1.1k
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error in noGGi
software error seqnames characters r chipseq
9.4 years ago awakumaya • 0
17
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4
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18k
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How to properly sort GRanges?
granges genomicranges sort seqnames order
updated 10.5 years ago by ▴ 30 • written 10.9 years ago by ▴ 680
0
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6
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7.2k
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GRanges: problem with multiple seqnames and seqlengths
GRanges seqnames seqlengths IRanges
11.0 years ago topher.hamm • 0
7 results • Page 1 of 1
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Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups by Gordon Smyth 53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Votes
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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