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Splatter
•
reset
0
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3
replies
2.0k
views
Trouble installing splatter
installation
splatter
7.0 years ago
luke.zappia
▴ 50
4
votes
2
replies
942
views
Splatter: simulating fold changes for specific genes?
splatter
5.5 years ago
Brian Haas
▴ 90
3
votes
3
replies
2.3k
views
is SCEset fully abandoned in scran?
scran
scater
splatter
normalization
updated 6.5 years ago by
davis
▴ 90 • written 6.5 years ago by
wt215
• 0
0
votes
1
reply
1.1k
views
Control group size
splatter
6.5 years ago
luke.zappia
▴ 50
0
votes
1
reply
1.1k
views
Splatter: How to simulate cells in different groups and different path at the same time?
splatter
6.5 years ago
luke.zappia
▴ 50
0
votes
1
reply
880
views
Simulating paths returns identical values
splatter
6.1 years ago
luke.zappia
▴ 50
2
votes
3
replies
1.3k
views
splatter simulating paths
splatter
single cell
6.1 years ago
nikolaspapadop
▴ 10
5
votes
2
replies
1.7k
views
Accessing normalized counts
splatter
singlecellexperiment
scater
6.1 years ago
luke.zappia
▴ 50
1
vote
1
reply
968
views
Any pointers on simulating cell outliers?
splatter
simulation
6.0 years ago
luke.zappia
▴ 50
0
votes
5
replies
1.2k
views
How to use Splatter to simulate a known number of DE genes in only two groups of cells ?
splatter
Splatter
updated 5.2 years ago by
luke.zappia
▴ 50 • written 5.2 years ago by
chenxofhit
• 0
0
votes
1
reply
651
views
change values on Differential Expression parameters
splatter
updated 4.5 years ago by
luke.zappia
▴ 50 • written 4.6 years ago by
jp3770
• 0
0
votes
1
reply
724
views
DE analysis packages not detecting Splat DE simulated genes
splatter
updated 3.7 years ago by
luke.zappia
▴ 50 • written 3.7 years ago by
olympia.hardy13
• 0
0
votes
1
reply
962
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData
splatter
updated 24 months ago by
luke.zappia
▴ 50 • written 2.0 years ago by
Fatima
• 0
0
votes
1
reply
915
views
Robustness of Splat cell grouping
splatter
6.9 years ago
luke.zappia
▴ 50
1
vote
2
replies
840
views
Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment
splatter
2.5 years ago
Fatima
• 0
0
votes
2
replies
892
views
I cannot install the splatter on colab
splatter
biocmanager
written 3.1 years ago by
Tianyu
• 0
16 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0
by
James W. MacDonald
65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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