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698

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Affymetrix CEL TXT

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by pbachali ▴ 50

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496

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read.table TXT

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by ekl • 0

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882

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Annotation GEO TXT

updated 4.5 years ago by Sean Davis 21k • written 4.5 years ago by ekl • 0

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705

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Files TXT

updated 4.5 years ago by Gordon Smyth 50k • written 4.5 years ago by ekl • 0

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2.1k

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qPCRset object nondetects r package txt

updated 6 months ago by Nat.Nataren • 0 • written 6.3 years ago by s.m.may • 0

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4.8k

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EdgeR normalization fastq txt TMM

updated 24 months ago by Gordon Smyth 50k • written 8.5 years ago by hamidrezarazzaghian • 0

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2.2k

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r TXT codelink

8.8 years ago Agaz Hussain Wani ▴ 260

7 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

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A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

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