Showing : TimeSeriesExperiment • reset
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Proteomics-time series with repeated measures
Proteomics limma repeatedmeasures TimeSeriesExperiment
18 months ago proteome_AO • 0
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time course microarray data ArrayExpress database
R GillespieColin ArrayExpress import TimeSeriesExperiment
updated 6 months ago by ▴ 40 • written 18 months ago by ▴ 20
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Time serious analysis Wald test in results()
DESeq2 TimeSeriesExperiment
updated 19 months ago by 41k • written 19 months ago by • 0
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Comparison between treatment timepoints in a single timeseries (control is first timepoint)
DESeq2 single-timeseries TimeSeriesExperiment
updated 19 months ago by 41k • written 19 months ago by • 0
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Time-series analyses of a multifactor design with DESeq2
DESeq2 MultipleFactors TimeSeriesExperiment
updated 20 months ago by 41k • written 20 months ago by • 0
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Deseq2 contrasts and design for paired analysis
TimeSeriesExperiment RNASeq design DESeq2
updated 2.4 years ago by 41k • written 2.4 years ago by • 0
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limma: pvalues for coefficients topTable
TimeSeriesExperiment Regression top limma
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
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DESeq2 time course and dosage response
LRT Design DESeq2 doseResponse TimeSeriesExperiment
updated 2.7 years ago by 41k • written 2.7 years ago by • 0
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Time series analysis - DESeq2
TimeSeriesExperiment
updated 3.0 years ago by 41k • written 3.0 years ago by ▴ 10
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Job: Biostatistics Research Associate, York, UK
QTL fourier TimeSeriesExperiment timecoursedata
3.0 years ago Daphne • 0
10 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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