Bioconductor Timecourse

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172

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DESeq2 timecourse DifferentialExpression

updated 4 weeks ago by James W. MacDonald 65k • written 4 weeks ago by joshua.mannheimer • 0

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244

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DESeq2 timecourse time

updated 3 months ago by Michael Love 42k • written 3 months ago by Anastasiia • 0

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272

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RNASeq DESeq2 timecourse

3 months ago WS • 0

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2.7k

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limma edger timecourse without replicate voom

written 7.5 years ago by Camila Orellana ▴ 10

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930

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Debebe • 0

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512

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timecoursedata RNASeqData TimeCourse DESeq2

updated 10 months ago by Michael Love 42k • written 10 months ago by georgii.vdovin • 0

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1.4k

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Transcriptomics TimeCourse DESeq2

updated 9 months ago by Michael Love 42k • written 10 months ago by smac97 • 0

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565

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timecourse KEGG DESeq2

updated 11 months ago by Michael Love 42k • written 11 months ago by Fred • 0

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1.4k

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deseq2 timecourse design and contrast matrix

updated 8 weeks ago by ta_awwad ▴ 10 • written 8.5 years ago by Assa Yeroslaviz ★ 1.5k

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

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Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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