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VariantFiltering
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library VaraintFiltration looking for explanation of pedigree file
bioconductor
variantfiltering
6.7 years ago
Claus.Hultschig
• 0
0
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1
reply
366
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VariantFiltering error
VariantFiltering
updated 10 months ago by
Robert Castelo
★ 3.3k • written 10 months ago by
Andrew Beggs
▴ 90
3
votes
2
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1.4k
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filtering VCF files
variantannotation
variantfiltering
updated 7.1 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
Bogdan
▴ 670
0
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1
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1.5k
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Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
Mohamed
▴ 30
1
vote
1
reply
1.3k
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retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
variantfiltering
phastcons
updated 9.0 years ago by
Robert Castelo
★ 3.3k • written 9.0 years ago by
Stefanie Tauber
▴ 40
0
votes
0
replies
1.7k
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problems installing VariantFiltering package
VariantFiltering
VariantFiltering
10.0 years ago
Robert Castelo
★ 3.3k
4
votes
0
replies
1.5k
views
News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
8.9 years ago
Matthew Ritchie
▴ 1000
0
votes
1
reply
1.1k
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Problems with autosomalRecessiveHomozygous
VariantFiltering
8.8 years ago
claire.simpson
• 0
0
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0
replies
454
views
Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
7 months ago
Bogdan
▴ 670
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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