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WGCNA package
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0
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3
replies
1.4k
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problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq
WGCNA package
soft power
written 7.3 years ago by
modarzi
▴ 10
1
vote
0
replies
1.4k
views
WGCNA trait order in heat map
wgcna
WGCNA
wgcna package
5.7 years ago
coyoung
▴ 10
0
votes
3
replies
4.2k
views
Module preservation WGCNA
wgcna
wgcna package
modulepreservation
written 6.9 years ago by
bekah
▴ 40
0
votes
1
reply
2.5k
views
WGCNA: Matching eigengenes to samples
wgcna
wgcna package
6.9 years ago
Jack
• 0
0
votes
2
replies
1.6k
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package
wgcna
7.0 years ago
anni.djurhuus
• 0
2
votes
3
replies
2.1k
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package
TCGA
LocusLinkID
genecode
ensembl
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
modarzi
▴ 10
0
votes
2
replies
4.0k
views
TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package
software error
updated 7.0 years ago by
Peter Langfelder
★ 3.0k • written 7.0 years ago by
giuseppe0525
• 0
0
votes
0
replies
1.5k
views
consensus module relationship
wgcna
wgcna package
consensus
7.1 years ago
2323982403
▴ 60
2
votes
4
replies
2.0k
views
Segfault error when loading WGCNA
wgcna
wgcna package
7.1 years ago
antoinefelden
▴ 10
2
votes
2
replies
6.3k
views
WGCNA extract genes from a module
WGCNA
wgcna package
updated 7.2 years ago by
Peter Langfelder
★ 3.0k • written 7.2 years ago by
bdy8
▴ 10
1
vote
3
replies
1.8k
views
SampleNetwork in WGCNA
wgcna
wgcna package
7.2 years ago
2323982403
▴ 60
0
votes
0
replies
3.0k
views
Use of bicor in WGCNA
WGCNA
wgcna package
wgcna
bicor
7.2 years ago
bekah
▴ 40
12
votes
15
replies
23k
views
WGCNA: Understanding module-trait correlations
wgcna package
updated 7.2 years ago by
Peter Langfelder
★ 3.0k • written 7.2 years ago by
bekah
▴ 40
13 results • Page
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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