Bioconductor WGCNA package

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RNA-seq WGCNA package soft power

written 7.4 years ago by modarzi ▴ 10

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wgcna WGCNA wgcna package

5.9 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

written 7.0 years ago by bekah ▴ 40

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wgcna wgcna package

7.0 years ago Jack • 0

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wgcna package wgcna

7.1 years ago anni.djurhuus • 0

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wgcna package TCGA LocusLinkID genecode ensembl

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by modarzi ▴ 10

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wgcna package software error

updated 7.2 years ago by Peter Langfelder ★ 3.0k • written 7.2 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

7.2 years ago 2323982403 ▴ 60

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wgcna wgcna package

7.3 years ago • updated 7.2 years ago antoinefelden ▴ 10

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WGCNA wgcna package

updated 7.3 years ago by Peter Langfelder ★ 3.0k • written 7.3 years ago by bdy8 ▴ 10

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wgcna wgcna package

7.3 years ago 2323982403 ▴ 60

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WGCNA wgcna package wgcna bicor

7.3 years ago bekah ▴ 40

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wgcna package

updated 7.4 years ago by Peter Langfelder ★ 3.0k • written 7.4 years ago by bekah ▴ 40

13 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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