Bioconductor WGCNA package

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RNA-seq WGCNA package soft power

written 7.3 years ago by modarzi ▴ 10

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wgcna WGCNA wgcna package

5.7 years ago coyoung ▴ 10

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4.2k

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wgcna wgcna package modulepreservation

written 6.9 years ago by bekah ▴ 40

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2.5k

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wgcna wgcna package

6.9 years ago Jack • 0

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1.6k

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wgcna package wgcna

7.0 years ago anni.djurhuus • 0

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2.1k

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wgcna package TCGA LocusLinkID genecode ensembl

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by modarzi ▴ 10

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wgcna package software error

updated 7.0 years ago by Peter Langfelder ★ 3.0k • written 7.0 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

7.1 years ago 2323982403 ▴ 60

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wgcna wgcna package

7.1 years ago antoinefelden ▴ 10

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6.3k

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WGCNA wgcna package

updated 7.2 years ago by Peter Langfelder ★ 3.0k • written 7.2 years ago by bdy8 ▴ 10

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1.8k

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wgcna wgcna package

7.2 years ago 2323982403 ▴ 60

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3.0k

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WGCNA wgcna package wgcna bicor

7.2 years ago bekah ▴ 40

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23k

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wgcna package

updated 7.2 years ago by Peter Langfelder ★ 3.0k • written 7.2 years ago by bekah ▴ 40

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

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Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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