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WGCNA package
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reset
1
vote
0
replies
1.1k
views
WGCNA trait order in heat map
wgcna
WGCNA
wgcna package
4.8 years ago
coyoung
▴ 10
0
votes
2
replies
3.2k
views
Module preservation WGCNA
wgcna
wgcna package
modulepreservation
updated 6.0 years ago by
Peter Langfelder
★ 3.0k • written 6.0 years ago by
bekah
▴ 40
0
votes
1
reply
2.2k
views
WGCNA: Matching eigengenes to samples
wgcna
wgcna package
6.0 years ago
Jack
• 0
0
votes
2
replies
1.4k
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package
wgcna
6.0 years ago
anni.djurhuus
• 0
2
votes
3
replies
1.7k
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package
TCGA
LocusLinkID
genecode
ensembl
updated 6.1 years ago by
James W. MacDonald
67k • written 6.1 years ago by
modarzi
▴ 10
0
votes
2
replies
3.6k
views
TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package
software error
updated 6.1 years ago by
Peter Langfelder
★ 3.0k • written 6.1 years ago by
giuseppe0525
• 0
0
votes
0
replies
1.2k
views
consensus module relationship
wgcna
wgcna package
consensus
6.2 years ago
2323982403
▴ 60
2
votes
4
replies
1.8k
views
Segfault error when loading WGCNA
wgcna
wgcna package
6.2 years ago
antoinefelden
▴ 10
2
votes
2
replies
5.5k
views
WGCNA extract genes from a module
WGCNA
wgcna package
updated 6.3 years ago by
Peter Langfelder
★ 3.0k • written 6.3 years ago by
bdy8
▴ 10
1
vote
3
replies
1.5k
views
SampleNetwork in WGCNA
wgcna
wgcna package
6.3 years ago
2323982403
▴ 60
0
votes
0
replies
2.7k
views
Use of bicor in WGCNA
WGCNA
wgcna package
wgcna
bicor
6.3 years ago
bekah
▴ 40
12
votes
15
replies
18k
views
WGCNA: Understanding module-trait correlations
wgcna package
updated 6.3 years ago by
Peter Langfelder
★ 3.0k • written 6.3 years ago by
bekah
▴ 40
0
votes
0
replies
1.0k
views
problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq
WGCNA package
soft power
6.4 years ago
modarzi
▴ 10
13 results • Page
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Replies
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
by
James W. MacDonald
67k
This support site is meant to help people with technical questions about using Bioconductor packages. Your question is probably better suit…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
This is the traceback I got after running AddMotifs if this is informative? ``` 23: stop(wmsg("trying to load regions beyond the boundaries…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
James W. MacDonald
67k
You will probably have to ask the Signac people. I don't know exactly what is going on under the hood for `AddMotif`, but the `EnsDb` seems…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…
Comment: WGCNA with TPM tables
by
ATpoint
★ 4.5k
WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …
Votes
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
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