Bioconductor WGCNA package

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RNA-seq WGCNA package soft power

written 7.3 years ago by modarzi ▴ 10

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wgcna WGCNA wgcna package

5.7 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

written 6.9 years ago by bekah ▴ 40

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wgcna wgcna package

6.9 years ago Jack • 0

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wgcna package wgcna

7.0 years ago anni.djurhuus • 0

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wgcna package TCGA LocusLinkID genecode ensembl

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by modarzi ▴ 10

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wgcna package software error

updated 7.1 years ago by Peter Langfelder ★ 3.0k • written 7.1 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

7.1 years ago 2323982403 ▴ 60

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wgcna wgcna package

7.1 years ago antoinefelden ▴ 10

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WGCNA wgcna package

updated 7.2 years ago by Peter Langfelder ★ 3.0k • written 7.2 years ago by bdy8 ▴ 10

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wgcna wgcna package

7.2 years ago 2323982403 ▴ 60

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WGCNA wgcna package wgcna bicor

7.2 years ago bekah ▴ 40

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wgcna package

updated 7.2 years ago by Peter Langfelder ★ 3.0k • written 7.2 years ago by bekah ▴ 40

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

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DESeq2 for candidate gene analysis

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Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

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