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WGCNA package
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0
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3
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1.4k
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problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq
WGCNA package
soft power
written 7.3 years ago by
modarzi
▴ 10
1
vote
0
replies
1.4k
views
WGCNA trait order in heat map
wgcna
WGCNA
wgcna package
5.7 years ago
coyoung
▴ 10
0
votes
3
replies
4.2k
views
Module preservation WGCNA
wgcna
wgcna package
modulepreservation
written 6.9 years ago by
bekah
▴ 40
0
votes
1
reply
2.5k
views
WGCNA: Matching eigengenes to samples
wgcna
wgcna package
6.9 years ago
Jack
• 0
0
votes
2
replies
1.6k
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package
wgcna
7.0 years ago
anni.djurhuus
• 0
2
votes
3
replies
2.1k
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package
TCGA
LocusLinkID
genecode
ensembl
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
modarzi
▴ 10
0
votes
2
replies
4.0k
views
TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package
software error
updated 7.1 years ago by
Peter Langfelder
★ 3.0k • written 7.1 years ago by
giuseppe0525
• 0
0
votes
0
replies
1.5k
views
consensus module relationship
wgcna
wgcna package
consensus
7.1 years ago
2323982403
▴ 60
2
votes
4
replies
2.0k
views
Segfault error when loading WGCNA
wgcna
wgcna package
7.1 years ago
antoinefelden
▴ 10
2
votes
2
replies
6.4k
views
WGCNA extract genes from a module
WGCNA
wgcna package
updated 7.2 years ago by
Peter Langfelder
★ 3.0k • written 7.2 years ago by
bdy8
▴ 10
1
vote
3
replies
1.8k
views
SampleNetwork in WGCNA
wgcna
wgcna package
7.2 years ago
2323982403
▴ 60
0
votes
0
replies
3.0k
views
Use of bicor in WGCNA
WGCNA
wgcna package
wgcna
bicor
7.2 years ago
bekah
▴ 40
12
votes
15
replies
24k
views
WGCNA: Understanding module-trait correlations
wgcna package
updated 7.2 years ago by
Peter Langfelder
★ 3.0k • written 7.2 years ago by
bekah
▴ 40
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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