Showing : acgh • reset
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago Matthew Hannah ▴ 940
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0
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1.1k
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analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
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0
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1.3k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
18.0 years ago Seth Falcon ★ 7.4k
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0
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1.3k
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Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
19.9 years ago grischa tödt ▴ 30
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0
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1.0k
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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0
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1.1k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.5 years ago Goeman, J.J. MSTAT ▴ 150
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0
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1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.5 years ago rgentleman ★ 5.5k
0
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5
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1.0k
views
Problems with aCGH library
aCGH aCGH aCGH aCGH
19.5 years ago Christopher, Neil NIH/NCI ▴ 70
0
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1
reply
680
views
aCGH modify plotting method
aCGH aCGH aCGH aCGH
updated 19.4 years ago by 65k • written 19.4 years ago by ▴ 70
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0
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625
views
aCGH problem
aCGH aCGH aCGH aCGH
19.4 years ago Christopher, Neil NIH/NCI ▴ 70
0
votes
0
replies
663
views
help needed for aCGH package
aCGH Genetics aCGH aCGH Genetics aCGH
19.2 years ago Alberto Goldoni ▴ 360
0
votes
1
reply
734
views
help needed for aCGH package
aCGH aCGH aCGH aCGH
updated 19.2 years ago by 21k • written 19.2 years ago by ★ 7.4k
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0
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1.1k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
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1
reply
824
views
problem with getting the right plot in aCGH
aCGH aCGH aCGH aCGH
updated 18.8 years ago by ★ 1.8k • written 18.8 years ago by ▴ 30
0
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0
replies
1.4k
views
Problem installing rmutil/repeated
aCGH aCGH aCGH aCGH
18.8 years ago J-C. Marioni ▴ 30
0
votes
0
replies
772
views
Problems with aCGH library
aCGH affy aCGH aCGH affy aCGH
18.8 years ago Justin Borevitz ▴ 170
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votes
6
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1.6k
views
ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.5 years ago by ▴ 190 • written 18.5 years ago by ★ 7.4k
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3
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1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
0
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0
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895
views
scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
17.9 years ago Steven McKinney ▴ 310
0
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0
replies
1.1k
views
aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
17.4 years ago Sean Davis 21k
0
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1
reply
704
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.4 years ago by 21k • written 17.4 years ago by ★ 1.9k
0
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3
replies
865
views
aCGH install requied sma
aCGH aCGH aCGH aCGH
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 20
0
votes
1
reply
871
views
Import GEO Soft format
aCGH Cancer aCGH aCGH Cancer aCGH
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ★ 1.9k
0
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0
replies
1.2k
views
flagging spots in marray
aCGH Microarray Normalization GO Cancer Biobase annotate genefilter affy affydata limma
17.3 years ago Gordon Smyth 50k
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2
replies
1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
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0
replies
686
views
aCGH data format
aCGH aCGH aCGH aCGH
17.2 years ago Lee, Jason Thanh ▴ 20
0
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0
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498
views
acgh process problem
aCGH Cancer aCGH aCGH Cancer aCGH
17.2 years ago Daniel Brewer ★ 1.9k
0
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0
replies
743
views
how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
17.1 years ago Ruppert Valentino ▴ 270
0
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0
replies
912
views
aCGH: using T instead of TRUE
aCGH Cancer aCGH aCGH Cancer aCGH
17.1 years ago Ramon Diaz ★ 1.1k
0
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2
replies
945
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.0 years ago by 21k • written 17.0 years ago by ▴ 90
0
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1
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1.3k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.8 years ago Steven McKinney ▴ 310
0
votes
2
replies
1.0k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
16.8 years ago Ian Roberts ▴ 70
0
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0
replies
745
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
16.8 years ago Ian Roberts ▴ 70
0
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1
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1.2k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
16.8 years ago Benjamin Otto ▴ 830
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0
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679
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
16.6 years ago Lyudmila Mikhaylova ▴ 20
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2
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1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
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4
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1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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0
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686
views
aCGH package error: MAD
aCGH aCGH aCGH aCGH
16.4 years ago affy snp ▴ 640
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0
replies
1.2k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
16.2 years ago Vincent J. Carey, Jr. 6.7k
0
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1
reply
784
views
Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 210
0
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3
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1.2k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
16.1 years ago pingzhao Hu ▴ 210
0
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2
replies
1.2k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 15.9 years ago by ★ 2.4k • written 15.9 years ago by ★ 1.9k
0
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0
replies
948
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
14.3 years ago Anguraj Sadanandam ▴ 10
0
votes
0
replies
708
views
A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
15.8 years ago affy snp ▴ 640
0
votes
0
replies
1.2k
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
11.4 years ago Guest User ★ 13k
0
votes
2
replies
1.2k
views
CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 15.6 years ago by ▴ 110 • written 15.6 years ago by ▴ 40
0
votes
1
reply
2.0k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 300
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
2
replies
3.8k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 8.8 years ago by • 0 • written 11.1 years ago by ★ 8.2k
0
votes
4
replies
1.3k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 360
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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