Bioconductor All

Showing : all • reset

votes

replies

834

views

Bioconductor ALL

11 months ago • updated 10 months ago simone.tiberi • 0

votes

491

views

ALL The DifferentialRegulation PathNet

updated 14 months ago by heritageericsson • 0 • written 15 months ago by Mine • 0

votes

1.7k

views

ALL

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by xxxsarahkimxxx • 0

vote

replies

2.0k

views

biocLite update all default ask

updated 5.2 years ago by Fischer-philipp ▴ 30 • written 5.2 years ago by rgiannico ▴ 10

votes

replies

1.4k

views

bioconductor ALL linear model

updated 5.7 years ago by Gordon Smyth 50k • written 5.7 years ago by detroit.drive • 0

votes

replies

1.4k

views

bioconductor ALL R Job

5.7 years ago detroit.drive • 0

votes

replies

2.3k

views

ALL bioconductor biobase exprs

updated 5.7 years ago by Martin Morgan 25k • written 5.8 years ago by detroit.drive • 0

votes

1.4k

views

R ALL

updated 7.5 years ago by Marcel Ramos 690 • written 7.5 years ago by mdfislam89 • 0

votes

2.7k

views

installation packages bioconductor all

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by av • 0

9 results • Page 1 of 1

Recent ...

Replies

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

Awards • All