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Bioconductor Cloud AMI - How to Access Microarray Files Stored in Amazon S3 Buckets?
amazon
bioconductor aws
s3
oligo package
affybatch
5.6 years ago
perdedorium
• 0
2
votes
6
replies
1.4k
views
Enable copying Bioconductor AMI to new region
aws
bioconductor aws
ami
amazon
updated 6.1 years ago by
shepherl
3.6k • written 6.1 years ago by
neal
▴ 10
5
votes
2
replies
2.5k
views
Copying Amazon Bioconductor AMI to another zone
amazon
cloud
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
Thomas Sandmann
▴ 90
0
votes
2
replies
1.5k
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How to launch a preconfigured Bioconductor AMI session using the free tier with RStudio Server?
bioconductor
amazon
ami
cloud
updated 7.4 years ago by
shepherl
3.6k • written 7.4 years ago by
kdkorthauer
• 0
0
votes
2
replies
1.3k
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Help with AMI hosted on bioconductor page, ami-a3d126c8
BiocParallel
amazon
8.3 years ago
nitesh.turaga
140
5 results • Page
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Answer: Filter genes by expression for voomLmFit
by
James W. MacDonald
64k
`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…
Comment: How to get DMR for Infinium methylation EPIC v2
by
James W. MacDonald
64k
You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`. ``` eset <- preprocessFunnorm(dat) myAn…
Comment: SingleR annotation of several slots/patients
by
Bine
▴ 20
Ah, I just found the function JoinLayers.. I think this should help...
Answer: WGCNA correlation sign differences between eigen genes/ hub genes and clinical t
by
Vanatta
• 0
It is possible that the hub genes are not directly related to the immune score but are instead related to other factors that are negatively…
Comment: SingleR annotation of several slots/patients
by
Bine
▴ 20
Thank you for your comment & help. When I try to run it with clusters it complains about having multiple layers: GetAssayData(kid.filt…
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Answer: SingleR annotation of several slots/patients
Answer: List of Deprecated Packages for Bioc3.18
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
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