Biostar Ami

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459

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Release release AWS AMI Bioconductor

updated 15 months ago by Vincent J. Carey, Jr. 6.6k • written 15 months ago by shepherl 3.2k

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817

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RStudio AWS AMI

3.1 years ago bio-explorer • 0

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855

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aws bioconductor aws ami amazon

updated 4.8 years ago by shepherl 3.2k • written 4.8 years ago by neal ▴ 10

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921

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AMI rstudio server

updated 5.2 years ago by shepherl 3.2k • written 5.2 years ago by Thomas Sandmann ▴ 80

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1.6k

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AMI

updated 5.5 years ago by Dan Tenenbaum ★ 8.2k • written 5.5 years ago by spollack • 0

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1.1k

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bioconductor amazon ami cloud

updated 6.1 years ago by shepherl 3.2k • written 6.1 years ago by kdkorthauer • 0

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837

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ami

updated 6.6 years ago by Dan Tenenbaum ★ 8.2k • written 6.6 years ago by joshmobrien • 0

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1.5k

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ami starcluster biocparallel sge AWS

6.9 years ago n.huckle ▴ 30

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1.9k

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AMI RStudio upload error custom install

updated 7.6 years ago by Dan Tenenbaum ★ 8.2k • written 7.6 years ago by nicholas.provart • 0

9 results • Page 1 of 1

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Comment: using DESeq2 for ATAC analyses by eric.kern13 ▴ 10

To expand on what's written here: deseq2 can achieve roughly constant variance $C$ across genes by setting the per-gene dispersion $\phi_j$…

Comment: TPM normalization starting with read counts by ATpoint ★ 1.4k

Neither edgeR nor DESeq2 output TPM directly. TPM is easy to calculate though if counts and appropriate length info is available (https://s…

Comment: error running UniProt.ws by davi.vuko • 0

I still get the same result as above, should running BiocManager::install() do the trick?

Answer: Adding custom transcript to Salmon index by ATpoint ★ 1.4k

Yes, you would add the sequence to the reference transcriptome that is used for the gentrome construction. Simply make a separate fasta fil…

Comment: IsoformSwitchAnalyzeR package on mouse data by bpshtiwan ▴ 10

Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best

Votes

A: Importance of Order in Design Formula

remove microarray batch effects using Limma

On empirical Bayes of edgeR

Answer: CQN to DESeq2

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

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Scholar to Thomas Carroll ▴ 410