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ami
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5
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SGE backend on Bioc AMI with Starcluster not recognising CPUs
ami
starcluster
biocparallel
sge
AWS
8.6 years ago
n.huckle
▴ 30
2
votes
6
replies
1.5k
views
Enable copying Bioconductor AMI to new region
aws
bioconductor aws
ami
amazon
updated 6.5 years ago by
shepherl
3.9k • written 6.6 years ago by
neal
▴ 10
2
votes
2
replies
1.2k
views
Is shellinabox support a feature of all Bioconductor Amazon Machine Images?
ami
updated 8.4 years ago by
Dan Tenenbaum
★ 8.2k • written 8.4 years ago by
joshmobrien
• 0
1
vote
2
replies
1.3k
views
RStudio in Bioconductor 3.5 AMI incompatible with R 3.4
AMI
rstudio server
updated 6.9 years ago by
shepherl
3.9k • written 6.9 years ago by
Thomas Sandmann
▴ 90
0
votes
1
reply
2.3k
views
Upload error in RStudio running on Amazon - AMI
AMI
RStudio
upload error
custom install
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
nicholas.provart
• 0
0
votes
3
replies
1.1k
views
Bioconductor Release AMI's
Release
release
AWS
AMI
Bioconductor
updated 3.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.0 years ago by
shepherl
3.9k
0
votes
2
replies
1.6k
views
How to launch a preconfigured Bioconductor AMI session using the free tier with RStudio Server?
bioconductor
amazon
ami
cloud
updated 7.8 years ago by
shepherl
3.9k • written 7.8 years ago by
kdkorthauer
• 0
0
votes
7
replies
2.2k
views
Using AMI with StarCluster - error authenticating
AMI
updated 7.2 years ago by
Dan Tenenbaum
★ 8.2k • written 7.2 years ago by
spollack
• 0
0
votes
5
replies
1.6k
views
Using RStudio AMI with localhost
RStudio
AWS
AMI
4.8 years ago
bio-explorer
• 0
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Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
A little late to the party, but I found that using the equation you specified, the p-values are actually slightly off from base R's `t.test…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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