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Answer: No counts, just fold change data
by
swbarnes2
▴
770
> in order to connect the differentially expressed genes to pathways,
> filter what is relevant and further analyse the network.
I thin…
Comment: How to do annotation with Limma
by
James W. MacDonald
57k
I should also point out that the fid isn't really the probe ID. For this array (and IIRC all of the random-primer arrays), there really isn…
Comment: How to do annotation with Limma
by
James W. MacDonald
57k
The probe IDs are different from the probeset IDs, and are usually not of interest. Each probeset is made up of 4 or more probes (depending…
Comment: How to do annotation with Limma
by
1gagoogag1
•
0
Thank you so much for your explanation!
I have a question about how can I get the probeIDs and are they different from the probe set ID?
Comment: How to select summit size for histone ChiP-Seq in Diffbind
by
millerh1
•
0
Without the `summits` parameter, I usually find a very strong relationship between the `FDR` and `width` for peaks, especially for diffuse …
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