Showing : annotation • reset
0
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1
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4.0k
views
Multi-sample VCF file and filterVcf
VariantAnnotation Annotation VariantAnnotation VariantAnnotation Annotation VariantAnnotation
updated 11.5 years ago by ★ 6.8k • written 11.5 years ago by ★ 13k
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Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation Classification Clustering Annotation Classification Clustering
11.5 years ago Wolfgang Huber ★ 13k
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3
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2.9k
views
featureCounts segfault
Annotation BSgenome BSgenome Rsubread Annotation BSgenome BSgenome Rsubread
updated 11.5 years ago by ★ 3.6k • written 11.5 years ago by ★ 7.9k
0
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5
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4.2k
views
Gviz AnnotationTrack - Consistent y-scales
Coverage Annotation graph Gviz Coverage Annotation graph Gviz
updated 11.5 years ago by ▴ 130 • written 11.5 years ago by ▴ 350
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0
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1.7k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
11.6 years ago Elena Serrano ▴ 30
0
votes
0
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2.5k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.6 years ago Elena Serrano ▴ 30
0
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1
reply
2.9k
views
RNA seq
Annotation Annotation
updated 11.6 years ago by ▴ 350 • written 11.6 years ago by ★ 13k
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4
replies
6.8k
views
Problem "Error: is.character(filenames) is not TRUE" in read.xysfiles (Oligo package)
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 11.6 years ago by 68k • written 11.6 years ago by ▴ 60
0
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1
reply
2.3k
views
Duplicate gene names after summarization with RMA (hugene.1.0.st.v1)
Annotation PROcess Annotation PROcess
updated 11.6 years ago by 68k • written 11.6 years ago by ★ 13k
0
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6
replies
2.0k
views
DEXSeq output - count file
Annotation limma DEXSeq Annotation limma DEXSeq
updated 11.6 years ago by ▴ 310 • written 11.6 years ago by ★ 1.9k
0
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2
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1.9k
views
oligo annotation: pd.mogene.2.0.st vs pd.mogene.2.0.st.v1
Microarray Annotation oligo Microarray Annotation oligo
updated 11.6 years ago by 68k • written 11.6 years ago by ▴ 610
0
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1
reply
994
views
justRMA (package Affy) messing up phenoData when passing an AnnotatedDataFrame
Annotation Cancer Annotation Cancer
updated 11.6 years ago by 68k • written 11.6 years ago by ▴ 100
0
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3
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1.4k
views
Cannot find the package created by pdInfoBuilder package
Annotation BSgenome probe BSgenome Annotation BSgenome probe BSgenome
updated 11.6 years ago by ★ 8.2k • written 11.6 years ago by ★ 13k
0
votes
2
replies
1.7k
views
Devel version of easyRNASeq: using the simpleRNASeq method gives an error
Annotation easyRNASeq Annotation easyRNASeq
updated 11.6 years ago by ▴ 80 • written 11.6 years ago by ▴ 320
0
votes
3
replies
1.5k
views
pdInfoBuilder - problem installing the annotation package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 11.6 years ago by ★ 4.3k • written 11.6 years ago by ▴ 60
0
votes
3
replies
3.1k
views
GOStats: summary hyperGTest, count and size
Annotation GO Organism GOstats Annotation GO Organism GOstats
11.7 years ago Christine Gläßer ▴ 60
0
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2
replies
1.5k
views
dexseq zero length exons
Annotation DEXSeq Annotation DEXSeq
updated 11.7 years ago by ★ 1.9k • written 11.7 years ago by ▴ 310
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0
replies
2.3k
views
Gviz: axes related parameters
Annotation Gviz Annotation Gviz
11.7 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
2.1k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
11.7 years ago Allegra Petti ▴ 120
0
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0
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1.3k
views
CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing Annotation Classification Clustering Sequencing Annotation Classification
11.7 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
2.1k
views
CRLMM Annotation file
SNP Annotation cdf SNP Annotation cdf
updated 11.7 years ago by 68k • written 11.7 years ago by ▴ 40
0
votes
6
replies
3.6k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
votes
2
replies
1.6k
views
Candida albicans AnnotationData Package
Annotation Annotation
updated 4.2 years ago by • 0 • written 11.7 years ago by ★ 13k
0
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6
replies
4.4k
views
using rma() on XYS files using oligo package
Annotation Preprocessing Annotation Preprocessing
updated 11.7 years ago by ★ 4.3k • written 11.7 years ago by ▴ 30
0
votes
1
reply
2.6k
views
crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 11.7 years ago by ▴ 1000 • written 11.7 years ago by ▴ 160
3
votes
17
replies
5.1k
views
filtering probes in affymetrix data
Annotation limma Annotation limma
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 180
0
votes
3
replies
2.2k
views
ReportingTools and gene annotation
Annotation GO cycle ReportingTools DESeq2 Annotation GO cycle ReportingTools DESeq2
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 340
0
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1
reply
2.0k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 11.8 years ago by ▴ 910 • written 11.8 years ago by ★ 4.3k
0
votes
1
reply
3.1k
views
Normalization of Illumina Array with separate bgx-file
Annotation limma beadarray bgx Annotation limma beadarray bgx
updated 11.8 years ago by 53k • written 11.8 years ago by ▴ 10
0
votes
3
replies
2.4k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 11.8 years ago by ▴ 20 • written 11.8 years ago by ★ 4.2k
0
votes
8
replies
3.0k
views
DEXSeq - too many exons in gene
Sequencing Annotation DEXSeq Sequencing Annotation DEXSeq
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ▴ 510
0
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0
replies
1.4k
views
Gviz pacakge
Annotation Gviz Annotation Gviz
11.8 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
1.2k
views
Ontology
Annotation GO annotate GOstats Annotation GO annotate GOstats
11.8 years ago Marc Carlson ★ 7.2k
0
votes
0
replies
2.4k
views
Pathview with minor species
Microarray Annotation GO Bacillus subtilis gage pathview Microarray Annotation GO gage
11.8 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.6k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
11.8 years ago C T ▴ 20
0
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1
reply
1.1k
views
Gviz pacakge
Annotation Gviz Annotation Gviz
11.8 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
1.6k
views
Pathview with minor species
Microarray Annotation Bacillus subtilis gage pathview Microarray Annotation gage pathview
11.8 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
2.2k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
11.8 years ago Isaac Neuhaus ▴ 360
0
votes
0
replies
3.8k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
11.8 years ago Elena Serrano ▴ 30
0
votes
3
replies
2.7k
views
Find enriched GO terms, given a list of GO terms of interest and background GO terms
Annotation GO topGO genomes Annotation GO topGO genomes
11.8 years ago Guest User ★ 13k
0
votes
3
replies
2.6k
views
ChIPpeakAnno: TSS at - strand
Annotation convert ChIPpeakAnno Annotation convert ChIPpeakAnno
11.8 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
2.4k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP Annotation SNP Annotation
updated 11.8 years ago by ▴ 890 • written 11.8 years ago by ▴ 190
0
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3
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2.5k
views
annotation of a probe in hgu133plus2
Annotation Annotation
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 510
0
votes
2
replies
2.0k
views
VCF as custom variant annotation database
Annotation SNPlocs Annotation SNPlocs
updated 11.8 years ago by ★ 6.8k • written 11.8 years ago by ▴ 380
0
votes
2
replies
1.6k
views
Where can I download/install old packages like 'org.Rn.eg.db' based on rn4?
Annotation GO BSgenome TranscriptDb BSgenome GenomicFeatures Annotation GO BSgenome
updated 11.9 years ago by 16k • written 11.9 years ago by ▴ 60
0
votes
5
replies
2.5k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews VariantAnnotation Annotation biocViews Rsubread VariantAnnotation gmapR BiocViews
11.9 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
1.9k
views
Easy way to convert CharacterList to character, collapsing each element?
Annotation Cancer Biostrings IRanges Annotation Cancer Biostrings IRanges
11.9 years ago Hervé Pagès 16k
0
votes
6
replies
1.3k
views
Easy way to convert CharacterList to character, collapsing each element?
Annotation Annotation
updated 11.9 years ago by 16k • written 11.9 years ago by ★ 7.9k
0
votes
1
reply
5.8k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS
updated 11.9 years ago by ▴ 280 • written 11.9 years ago by 16k
0
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0
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1.0k
views
inconsistency in illuminaHumanv4.db?
Annotation Annotation
11.9 years ago Perry Moerland ▴ 130
1,978 results • Page 13 of 40
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Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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