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annotationForge
•
reset
0
votes
2
replies
1.6k
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge
makeorgpackage
go
10.4 years ago
Keith Hughitt
▴ 180
0
votes
5
replies
2.6k
views
Error during makeOrgPackageFromNCBI
annotation
annotationforge
annotationdbi
makeorgpackagefromncbi
10.8 years ago
oliver.tills
• 0
0
votes
4
replies
2.9k
views
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 11.1 years ago by
Marc Carlson
★ 7.2k • written 11.1 years ago by
Simon Anders
★ 3.8k
1
vote
2
replies
2.7k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb
annotationdbi
annotationforge
updated 11.1 years ago by
Marc Carlson
★ 7.2k • written 11.1 years ago by
artur
▴ 80
3
votes
9
replies
3.6k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
11.1 years ago
artur
▴ 80
3
votes
3
replies
9.5k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge
Annotation
GO
updated 11.2 years ago by
Marc Carlson
★ 7.2k • written 11.2 years ago by
artur
▴ 80
0
votes
0
replies
1.4k
views
Failure to Install Organism Package from AnnotationForge
Organism
AnnotationDbi
AnnotationForge
Organism
AnnotationDbi
AnnotationForge
11.8 years ago
Guest User
★ 13k
1
vote
1
reply
2.1k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation
Organism
zebrafish
cdf
affy
AnnotationForge
Annotation
Organism
zebrafish
cdf
updated 12.1 years ago by
James W. MacDonald
68k • written 12.1 years ago by
Joao Sollari Lopes
▴ 80
0
votes
1
reply
1.6k
views
Error using makeDBPackage() from AnnotationForge package
Annotation
probe
AnnotationForge
Annotation
probe
AnnotationForge
updated 12.2 years ago by
Marc Carlson
★ 7.2k • written 12.2 years ago by
gabriel teku
▴ 80
1
vote
3
replies
2.3k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment
Annotation
Organism
Schizosaccharomyces pombe
biomaRt
AnnotationForge
Alignment
updated 12.2 years ago by
Marc Carlson
★ 7.2k • written 12.2 years ago by
Marco Blanchette
▴ 220
0
votes
1
reply
1.4k
views
答复: an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
12.3 years ago
joseph
▴ 50
0
votes
1
reply
1.3k
views
an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
updated 12.3 years ago by
Marc Carlson
★ 7.2k • written 12.3 years ago by
joseph
▴ 50
0
votes
1
reply
2.0k
views
nsFilter error in genefilter
GO
hgu133plus2
cdf
GSVA
AnnotationForge
GO
hgu133plus2
cdf
GSVA
AnnotationForge
updated 12.3 years ago by
James W. MacDonald
68k • written 12.4 years ago by
steven wink
▴ 90
0
votes
12
replies
8.2k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray
GO
oligo
AnnotationForge
Microarray
GO
oligo
AnnotationForge
12.7 years ago
James W. MacDonald
68k
64 results • Page
2 of 2
Recent ...
Replies
Comment: Save the Date: BioC2026
by
eja.gsssssswwse.r.m
• 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released!
by
eja.gsssssswwse.r.m
• 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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