Bioconductor AnnotationForge

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annotationforge makeorgpackage go

10.6 years ago Keith Hughitt ▴ 180

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annotation annotationforge annotationdbi makeorgpackagefromncbi

11.0 years ago • updated 10.9 years ago oliver.tills • 0

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annotationforge

updated 11.3 years ago by Marc Carlson ★ 7.2k • written 11.3 years ago by Simon Anders ★ 3.8k

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organismdb annotationdbi annotationforge

updated 11.3 years ago by Marc Carlson ★ 7.2k • written 11.3 years ago by artur ▴ 80

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goprofiles AnnotationForge Bimap GO

11.3 years ago artur ▴ 80

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annotationforge Annotation GO

updated 11.3 years ago by Marc Carlson ★ 7.2k • written 11.3 years ago by artur ▴ 80

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Organism AnnotationDbi AnnotationForge Organism AnnotationDbi AnnotationForge

11.9 years ago Guest User ★ 13k

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Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf

updated 12.3 years ago by James W. MacDonald 68k • written 12.3 years ago by Joao Sollari Lopes ▴ 80

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Annotation probe AnnotationForge Annotation probe AnnotationForge

updated 12.3 years ago by Marc Carlson ★ 7.2k • written 12.3 years ago by gabriel teku ▴ 80

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Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment

updated 12.4 years ago by Marc Carlson ★ 7.2k • written 12.4 years ago by Marco Blanchette ▴ 220

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Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy

12.4 years ago joseph ▴ 50

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Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy

updated 12.4 years ago by Marc Carlson ★ 7.2k • written 12.4 years ago by joseph ▴ 50

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GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge

updated 12.5 years ago by James W. MacDonald 68k • written 12.5 years ago by steven wink ▴ 90

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Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge

12.9 years ago James W. MacDonald 68k

64 results • Page 2 of 2

Recent ...

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Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …

Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 10

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Votes

Answer: Clarification on counting in Rsubread (featureCounts)

C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results

A: Conversion from counts to FPKM

Answer: Incosistencies in buildSNNGraph() function

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Great Question to fl ▴ 20

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