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annotationforge
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reset
0
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2
replies
1.7k
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge
makeorgpackage
go
10.7 years ago
Keith Hughitt
▴ 180
0
votes
5
replies
2.7k
views
Error during makeOrgPackageFromNCBI
annotation
annotationforge
annotationdbi
makeorgpackagefromncbi
11.1 years ago
oliver.tills
• 0
0
votes
4
replies
3.0k
views
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 11.4 years ago by
Marc Carlson
★ 7.2k • written 11.4 years ago by
Simon Anders
★ 3.8k
1
vote
2
replies
2.9k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb
annotationdbi
annotationforge
updated 11.4 years ago by
Marc Carlson
★ 7.2k • written 11.4 years ago by
artur
▴ 80
3
votes
9
replies
3.7k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
11.4 years ago
artur
▴ 80
3
votes
3
replies
9.8k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge
Annotation
GO
updated 11.4 years ago by
Marc Carlson
★ 7.2k • written 11.5 years ago by
artur
▴ 80
0
votes
0
replies
1.5k
views
Failure to Install Organism Package from AnnotationForge
Organism
AnnotationDbi
AnnotationForge
Organism
AnnotationDbi
AnnotationForge
12.0 years ago
Guest User
★ 13k
1
vote
1
reply
2.2k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation
Organism
zebrafish
cdf
affy
AnnotationForge
Annotation
Organism
zebrafish
cdf
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Joao Sollari Lopes
▴ 80
0
votes
1
reply
1.7k
views
Error using makeDBPackage() from AnnotationForge package
Annotation
probe
AnnotationForge
Annotation
probe
AnnotationForge
updated 12.5 years ago by
Marc Carlson
★ 7.2k • written 12.5 years ago by
gabriel teku
▴ 80
1
vote
3
replies
2.4k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment
Annotation
Organism
Schizosaccharomyces pombe
biomaRt
AnnotationForge
Alignment
updated 12.5 years ago by
Marc Carlson
★ 7.2k • written 12.5 years ago by
Marco Blanchette
▴ 220
0
votes
1
reply
1.5k
views
答复: an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
12.6 years ago
joseph
▴ 50
0
votes
1
reply
1.4k
views
an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
updated 12.6 years ago by
Marc Carlson
★ 7.2k • written 12.6 years ago by
joseph
▴ 50
0
votes
1
reply
2.1k
views
nsFilter error in genefilter
GO
hgu133plus2
cdf
GSVA
AnnotationForge
GO
hgu133plus2
cdf
GSVA
AnnotationForge
updated 12.6 years ago by
James W. MacDonald
68k • written 12.6 years ago by
steven wink
▴ 90
0
votes
12
replies
9.8k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray
GO
oligo
AnnotationForge
Microarray
GO
oligo
AnnotationForge
13.0 years ago
James W. MacDonald
68k
64 results • Page
2 of 2
Recent ...
Replies
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
Robert Castelo
★ 3.4k
Hi, the package you refer to is not called `SNPlocs.HSapiens.dbSNP155.GRCh38`, but `SNPlocs.Hsapiens.dbSNP155.GRCh38`, note the lowercase l…
Comment: Issue loading and downloading Bioconductor 3.22 packages after update
by
ATpoint
★ 5.0k
"Breaks" needs a more detailed explanation, together with code and error messages. Can you confirm it's not just the R download timeout aft…
Comment: Reproducibility of code in various Bioconductor versions
by
strawberry3
• 0
Thank you for advice! I have updated Bioconductor to the newest one, but now some of my commands don't work anymore, and I cannot download …
Answer: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
I'm not familiar with the packages you mention, but the whole reason why Bioconductor has versions is that code and annotation change. Code…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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