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ape
•
reset
0
votes
2
replies
1.3k
views
ape::dnds produces nan value
R
ape
dnds
nan
nanotubes
3.1 years ago
Working
• 0
0
votes
1
reply
1.8k
views
Difficulty with msaConvert function in R package
ape
msa
updated 3.7 years ago by
UBod
▴ 300 • written 4.1 years ago by
João Tadeu
• 0
0
votes
1
reply
1.6k
views
Issues while downloading supraHex package in Linux
supraHex
nlme
hexbin
ape
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
agneet257
• 0
0
votes
0
replies
1.7k
views
Phylogenetic tree from marker genes
ape
phyloseq
dist
metagenomics
8.7 years ago
David
▴ 860
0
votes
1
reply
4.5k
views
ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
10.5 years ago
wd
▴ 30
5 results • Page
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Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
victor04052024
• 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
victor04052024
• 0
The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…
Comment: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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