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ape
•
reset
0
votes
2
replies
1.3k
views
ape::dnds produces nan value
R
ape
dnds
nan
nanotubes
3.2 years ago
Working
• 0
0
votes
1
reply
2.0k
views
Difficulty with msaConvert function in R package
ape
msa
updated 3.8 years ago by
UBod
▴ 300 • written 4.2 years ago by
João Tadeu
• 0
0
votes
1
reply
1.6k
views
Issues while downloading supraHex package in Linux
supraHex
nlme
hexbin
ape
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
agneet257
• 0
0
votes
0
replies
1.8k
views
Phylogenetic tree from marker genes
ape
phyloseq
dist
metagenomics
8.8 years ago
David
▴ 860
0
votes
1
reply
4.6k
views
ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
10.6 years ago
wd
▴ 30
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Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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