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arrayweights
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16
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0
replies
3.7k
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simultaneous use of robust and weighting methods in limma
limma
robust
arrayWeights
10.4 years ago • updated 7.9 years ago
Gordon Smyth
50k
7
votes
2
replies
2.2k
views
Appropriate explanation of the methodology behind arrayWeights function from limma R package
limma
arrayWeights
variance
sampleQuality
microarray
updated 8.5 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
svlachavas
▴ 830
10
votes
4
replies
2.1k
views
limma-trend with random effects and/or array weights
limma-trend
duplicatecorrelation
arrayweights
limma
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
maltethodberg
▴ 180
4
votes
8
replies
1.7k
views
Combination of duplicateCorrelation with arrayWeights to increase power for DE detection in multilevel experiments
limma
duplicatecorrelation
arrayweights
microarray
updated 8.5 years ago by
Gordon Smyth
50k • written 8.5 years ago by
svlachavas
▴ 830
4
votes
5
replies
1.6k
views
limma: genas + arrayweights = OK?
limma
genas
arrayweights
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
Guido Hooiveld
★ 3.9k
2
votes
2
replies
1.4k
views
Correct use of arrayWeights alongside duplicateCorrelation for microarrays in Limma?
limma
duplicatecorrelation
arrayweights
8.6 years ago
willj
▴ 30
1
vote
2
replies
1.4k
views
limma normalization and arrayWeights fold change
limma
arrayweights
logfoldchange
neqc
normalization
updated 7.9 years ago by
svlachavas
▴ 830 • written 7.9 years ago by
merella.stefania
• 0
4
votes
1
reply
1.4k
views
simultaneous use of robust and weighting methods in limma.
limma
arrayweights
robust
updated 9.4 years ago by
Gordon Smyth
50k • written 10.4 years ago by
Richard Friedman
▴ 80
0
votes
1
reply
1.3k
views
Appropriate selection of DE list in limma before and after implementation of arrayWeights in conjuction with duplicateCorrelation functions
limma
microarray
multifactorial design
duplicatecorrelation
arrayweights
8.4 years ago
svlachavas
▴ 830
0
votes
1
reply
842
views
Illumina array weights--arrayWeights or beadCountWeights
limma
arrayweights
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
johnmcma
▴ 10
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Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0
by
James W. MacDonald
65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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