Bioconductor Bam file

Showing : bam file • reset

vote

replies

30k

views

R rnaseq bam file

updated 7.4 years ago by Gordon Smyth 53k • written 7.5 years ago by Merlin ▴ 10

votes

replies

1.5k

views

bam file STAR Illumina

updated 7.5 years ago by ta_awwad ▴ 10 • written 7.5 years ago by soheilazareie • 0

votes

replies

2.3k

views

bioconductor shortread bam file nucler

updated 7.7 years ago by Dario Strbenac ★ 1.6k • written 7.7 years ago by jfgout ▴ 10

votes

replies

1.9k

views

paired-end reads bam file

7.9 years ago ioannis.vardaxis ▴ 30

vote

replies

6.8k

views

bam file HIV cytosine

8.0 years ago achaillon • 0

vote

replies

4.7k

views

rsamtools bam file

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by seungjoon.kim • 0

votes

1.6k

views

medips bam file

9.4 years ago fkuo ▴ 10

votes

replies

1.6k

views

csaw up regions bam file gain and loss of enrichment

updated 9.6 years ago by Aaron Lun ★ 29k • written 9.6 years ago by JoannaF ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…

Votes

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

Awards • All