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bayseq
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0
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758
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Help with baySeq paired data analysis - error running 'getLikelihoods'
baySeq
3.3 years ago
sharvari gujja
▴ 40
0
votes
1
reply
3.3k
views
PCA analysis with 2 biological replicates
bayseq
PCA
6.4 years ago
bsad
• 0
2
votes
2
replies
1.4k
views
Setting up Experiment Design in baySeq
bayseq
updated 8.9 years ago by
Thomas J Hardcastle
▴ 180 • written 8.9 years ago by
adityabandla
▴ 10
0
votes
5
replies
1.9k
views
baySeq pairedData error
bayseq
updated 9.3 years ago by
Thomas J Hardcastle
▴ 180 • written 9.3 years ago by
amab424
• 0
0
votes
0
replies
1.6k
views
baySeq missing data
bayseq
missing data
10.3 years ago
k.w.lau
• 0
1
vote
5
replies
3.4k
views
baySeq issues and questions
bayseq
metagenomics
10.8 years ago • updated 10.6 years ago
lordbleys
• 0
1
vote
2
replies
1.4k
views
more complicated hypotheses than differential expression (with baySeq or a similar package)
bayseq
hypotheses
updated 10.8 years ago by
Gordon Smyth
52k • written 10.8 years ago by
Will Landau
• 0
0
votes
1
reply
1.9k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.3 years ago by
Koji Kadota
▴ 10 • written 11.3 years ago by
Gordon Smyth
52k
0
votes
1
reply
2.2k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.4 years ago by
Jianqiang SUN
▴ 10 • written 11.4 years ago by
Pankaj Agarwal
▴ 100
0
votes
2
replies
1.8k
views
Fwd: Paired Data Analysis in baySeq package
baySeq
baySeq
updated 11.5 years ago by
zhao shilin
▴ 60 • written 11.5 years ago by
Thomas J Hardcastle
▴ 180
0
votes
0
replies
1.3k
views
Paired Data Analysis in baySeq package
baySeq
baySeq
11.5 years ago
zhao shilin
▴ 60
0
votes
1
reply
1.4k
views
bayseq pair data
baySeq
baySeq
updated 11.9 years ago by
Thomas J Hardcastle
▴ 180 • written 11.9 years ago by
Guest User
★ 13k
0
votes
2
replies
3.2k
views
multi-mapped reads: Cufflinks + baySeq? edgeR?
GO
baySeq
GO
baySeq
12.5 years ago
Guest User
★ 13k
0
votes
2
replies
1.5k
views
weired bayseq results
baySeq
baySeq
12.8 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.0k
views
Bioconductor Digest, Vol 116, Issue 8
baySeq
baySeq
12.9 years ago
Thomas J Hardcastle
▴ 180
0
votes
0
replies
1.1k
views
baySeq and samplesize factor
baySeq
baySeq
12.9 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
1
reply
4.5k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 13.0 years ago by
Gordon Smyth
52k • written 13.0 years ago by
Elena Sorokin
▴ 160
0
votes
3
replies
1.5k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
13.5 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.3k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
13.5 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.4k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
13.5 years ago
Tina Asante Boahene
▴ 100
0
votes
2
replies
1.5k
views
Help With RNA-seq
Annotation
Normalization
Kidney
edgeR
baySeq
Annotation
Normalization
Kidney
edgeR
baySeq
13.6 years ago
Valerie Obenchain
★ 6.8k
0
votes
3
replies
1.7k
views
Help With RNA-seq
Normalization
edgeR
baySeq
Normalization
edgeR
baySeq
updated 13.6 years ago by
Valerie Obenchain
★ 6.8k • written 13.6 years ago by
Tina Asante Boahene
▴ 100
0
votes
1
reply
2.6k
views
TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
updated 13.8 years ago by
Smith, Hilary A
▴ 40 • written 13.8 years ago by
Gordon Smyth
52k
0
votes
0
replies
1.3k
views
TMM and calcNormFactors: Normalization in baySeq to match, edgeR and DESeq (Smith, Hilary A)
Normalization
edgeR
baySeq
DESeq
Normalization
edgeR
baySeq
DESeq
13.8 years ago
Thomas J Hardcastle
▴ 180
0
votes
0
replies
2.5k
views
bayseq and edgeR for multi groups comparisons
edgeR
baySeq
edgeR
baySeq
13.8 years ago
Gordon Smyth
52k
0
votes
0
replies
1.5k
views
baySeq issues
edgeR
baySeq
edgeR
baySeq
14.1 years ago
Iain Gallagher
▴ 930
0
votes
0
replies
1.4k
views
RNA-Seq with multiple factors [was Informations about DESeq package]
RNASeq
edgeR
baySeq
DESeq
RNASeq
edgeR
baySeq
DESeq
14.3 years ago
Gordon Smyth
52k
0
votes
2
replies
1.3k
views
Bayseq vignette is missing
baySeq
baySeq
updated 15.2 years ago by
Chao-Jen Wong
▴ 580 • written 15.2 years ago by
Naomi Altman
★ 6.0k
28 results • Page
1 of 1
Recent ...
Replies
Comment: Updated Support Site Editor
by
vs
• 0
Thanks for posting this comment, I had the same issue and was able to solve it with the ASCII clue. I am a non-native speaker of English, a…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ATpoint
★ 4.9k
No, cells from the same donor are correlated due to the donor effect. There is literature on this you should read to get started. https:/…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
Raya
• 0
Wouldn't each sample in the single cell rna seq act as a biological replicate? each condition (eg: mab3_20C) has ~70 single cell samples.
Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
by
James W. MacDonald
68k
>Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! They are not the…
Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
by
Denise
• 0
Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! And I suppose ther…
Votes
Comment: Updated Support Site Editor
Updated Support Site Editor
Comment: Updated Support Site Editor
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
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