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bayseq
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0
votes
1
reply
899
views
Help with baySeq paired data analysis - error running 'getLikelihoods'
baySeq
3.8 years ago
sharvari gujja
▴ 40
0
votes
1
reply
3.5k
views
PCA analysis with 2 biological replicates
bayseq
PCA
6.9 years ago
bsad
• 0
2
votes
2
replies
1.5k
views
Setting up Experiment Design in baySeq
bayseq
updated 9.3 years ago by
Thomas J Hardcastle
▴ 180 • written 9.4 years ago by
adityabandla
▴ 10
0
votes
5
replies
2.0k
views
baySeq pairedData error
bayseq
updated 9.8 years ago by
Thomas J Hardcastle
▴ 180 • written 9.8 years ago by
amab424
• 0
0
votes
0
replies
1.8k
views
baySeq missing data
bayseq
missing data
10.8 years ago
k.w.lau
• 0
1
vote
5
replies
3.6k
views
baySeq issues and questions
bayseq
metagenomics
11.2 years ago • updated 11.0 years ago
lordbleys
• 0
1
vote
2
replies
1.5k
views
more complicated hypotheses than differential expression (with baySeq or a similar package)
bayseq
hypotheses
updated 11.3 years ago by
Gordon Smyth
53k • written 11.3 years ago by
Will Landau
• 0
0
votes
1
reply
2.0k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.8 years ago by
Koji Kadota
▴ 10 • written 11.8 years ago by
Gordon Smyth
53k
0
votes
1
reply
2.3k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.8 years ago by
Jianqiang SUN
▴ 10 • written 11.8 years ago by
Pankaj Agarwal
▴ 100
0
votes
2
replies
1.9k
views
Fwd: Paired Data Analysis in baySeq package
baySeq
baySeq
updated 12.0 years ago by
zhao shilin
▴ 60 • written 12.0 years ago by
Thomas J Hardcastle
▴ 180
0
votes
0
replies
1.3k
views
Paired Data Analysis in baySeq package
baySeq
baySeq
12.0 years ago
zhao shilin
▴ 60
0
votes
1
reply
1.5k
views
bayseq pair data
baySeq
baySeq
updated 12.4 years ago by
Thomas J Hardcastle
▴ 180 • written 12.4 years ago by
Guest User
★ 13k
0
votes
2
replies
3.3k
views
multi-mapped reads: Cufflinks + baySeq? edgeR?
GO
baySeq
GO
baySeq
12.9 years ago
Guest User
★ 13k
0
votes
2
replies
1.6k
views
weired bayseq results
baySeq
baySeq
13.2 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 116, Issue 8
baySeq
baySeq
13.3 years ago
Thomas J Hardcastle
▴ 180
0
votes
0
replies
1.1k
views
baySeq and samplesize factor
baySeq
baySeq
13.3 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
1
reply
4.6k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 13.5 years ago by
Gordon Smyth
53k • written 13.5 years ago by
Elena Sorokin
▴ 160
0
votes
3
replies
1.6k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
13.9 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.4k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
14.0 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.5k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
14.0 years ago
Tina Asante Boahene
▴ 100
0
votes
2
replies
1.7k
views
Help With RNA-seq
Annotation
Normalization
Kidney
edgeR
baySeq
Annotation
Normalization
Kidney
edgeR
baySeq
14.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
3
replies
1.8k
views
Help With RNA-seq
Normalization
edgeR
baySeq
Normalization
edgeR
baySeq
updated 14.0 years ago by
Valerie Obenchain
★ 6.8k • written 14.0 years ago by
Tina Asante Boahene
▴ 100
0
votes
1
reply
2.7k
views
TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
updated 14.2 years ago by
Smith, Hilary A
▴ 40 • written 14.2 years ago by
Gordon Smyth
53k
0
votes
0
replies
1.4k
views
TMM and calcNormFactors: Normalization in baySeq to match, edgeR and DESeq (Smith, Hilary A)
Normalization
edgeR
baySeq
DESeq
Normalization
edgeR
baySeq
DESeq
14.2 years ago
Thomas J Hardcastle
▴ 180
0
votes
0
replies
2.6k
views
bayseq and edgeR for multi groups comparisons
edgeR
baySeq
edgeR
baySeq
14.2 years ago
Gordon Smyth
53k
0
votes
0
replies
1.6k
views
baySeq issues
edgeR
baySeq
edgeR
baySeq
14.5 years ago
Iain Gallagher
▴ 930
0
votes
0
replies
1.5k
views
RNA-Seq with multiple factors [was Informations about DESeq package]
RNASeq
edgeR
baySeq
DESeq
RNASeq
edgeR
baySeq
DESeq
14.8 years ago
Gordon Smyth
53k
0
votes
2
replies
1.4k
views
Bayseq vignette is missing
baySeq
baySeq
updated 15.7 years ago by
Chao-Jen Wong
▴ 580 • written 15.7 years ago by
Naomi Altman
★ 6.0k
28 results • Page
1 of 1
Recent ...
Replies
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error
by
a2sahaaaq2c
• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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shepherl
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