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bayseq
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4.1k
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RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 11.7 years ago by
Gordon Smyth
50k • written 11.7 years ago by
Elena Sorokin
▴ 150
1
vote
5
replies
2.9k
views
baySeq issues and questions
bayseq
metagenomics
9.5 years ago • updated 9.3 years ago
lordbleys
• 0
0
votes
2
replies
2.8k
views
multi-mapped reads: Cufflinks + baySeq? edgeR?
GO
baySeq
GO
baySeq
11.2 years ago
Guest User
★ 13k
0
votes
1
reply
2.5k
views
PCA analysis with 2 biological replicates
bayseq
PCA
5.1 years ago
bsad
• 0
0
votes
0
replies
2.2k
views
bayseq and edgeR for multi groups comparisons
edgeR
baySeq
edgeR
baySeq
12.5 years ago
Gordon Smyth
50k
0
votes
1
reply
2.2k
views
TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
updated 12.5 years ago by
Smith, Hilary A
▴ 40 • written 12.5 years ago by
Gordon Smyth
50k
0
votes
1
reply
1.7k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.1 years ago by
Jianqiang SUN
▴ 10 • written 10.1 years ago by
Pankaj Agarwal
▴ 100
0
votes
1
reply
1.6k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.1 years ago by
Koji Kadota
▴ 10 • written 10.1 years ago by
Gordon Smyth
50k
0
votes
2
replies
1.5k
views
Fwd: Paired Data Analysis in baySeq package
baySeq
baySeq
updated 10.2 years ago by
zhao shilin
▴ 60 • written 10.2 years ago by
Thomas J Hardcastle
▴ 180
0
votes
5
replies
1.5k
views
baySeq pairedData error
bayseq
updated 8.1 years ago by
Thomas J Hardcastle
▴ 180 • written 8.1 years ago by
amab424
• 0
0
votes
3
replies
1.4k
views
Help With RNA-seq
Normalization
edgeR
baySeq
Normalization
edgeR
baySeq
updated 12.3 years ago by
Valerie Obenchain
★ 6.8k • written 12.3 years ago by
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.3k
views
baySeq issues
edgeR
baySeq
edgeR
baySeq
12.8 years ago
Iain Gallagher
▴ 930
0
votes
0
replies
1.3k
views
baySeq missing data
bayseq
missing data
9.0 years ago
k.w.lau
• 0
0
votes
2
replies
1.2k
views
Help With RNA-seq
Annotation
Normalization
Kidney
edgeR
baySeq
Annotation
Normalization
Kidney
edgeR
baySeq
12.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
2
replies
1.2k
views
weired bayseq results
baySeq
baySeq
11.5 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
3
replies
1.2k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
12.2 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.2k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
12.3 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
RNA-Seq with multiple factors [was Informations about DESeq package]
RNASeq
edgeR
baySeq
DESeq
RNASeq
edgeR
baySeq
DESeq
13.0 years ago
Gordon Smyth
50k
0
votes
1
reply
1.1k
views
bayseq pair data
baySeq
baySeq
updated 10.6 years ago by
Thomas J Hardcastle
▴ 180 • written 10.6 years ago by
Guest User
★ 13k
2
votes
2
replies
1.1k
views
Setting up Experiment Design in baySeq
bayseq
updated 7.6 years ago by
Thomas J Hardcastle
▴ 180 • written 7.6 years ago by
adityabandla
▴ 10
0
votes
0
replies
1.1k
views
TMM and calcNormFactors: Normalization in baySeq to match, edgeR and DESeq (Smith, Hilary A)
Normalization
edgeR
baySeq
DESeq
Normalization
edgeR
baySeq
DESeq
12.5 years ago
Thomas J Hardcastle
▴ 180
1
vote
2
replies
1.1k
views
more complicated hypotheses than differential expression (with baySeq or a similar package)
bayseq
hypotheses
updated 9.5 years ago by
Gordon Smyth
50k • written 9.6 years ago by
Will Landau
• 0
0
votes
0
replies
1.1k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
12.3 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
Paired Data Analysis in baySeq package
baySeq
baySeq
10.2 years ago
zhao shilin
▴ 60
0
votes
2
replies
1.0k
views
Bayseq vignette is missing
baySeq
baySeq
updated 13.9 years ago by
Chao-Jen Wong
▴ 580 • written 13.9 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
856
views
baySeq and samplesize factor
baySeq
baySeq
11.6 years ago
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
834
views
Bioconductor Digest, Vol 116, Issue 8
baySeq
baySeq
11.6 years ago
Thomas J Hardcastle
▴ 180
0
votes
1
reply
496
views
Help with baySeq paired data analysis - error running 'getLikelihoods'
baySeq
2.0 years ago
sharvari gujja
▴ 40
28 results • Page
1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Michael Love
42k
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Haibo Liu
• 0
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HS
▴ 10
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DevelopingHippo
• 0
Scholar
to
Robert Castelo
★ 3.3k
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