Bioconductor Biocfilecache

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551

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rBLAST BiocFileCache

updated 8 months ago by shepherl 4.2k • written 8 months ago by Matthew Thornton ▴ 380

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2.0k

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AnnotationHub BiocFileCache

16 months ago Lluís Revilla Sancho ▴ 760

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BiocFileCache AnnotationHub ExperimentHub

2.0 years ago • updated 18 months ago shepherl 4.2k

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BiocFileCache

3.4 years ago • updated 3.1 years ago kent.riemondy ▴ 20

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4.0k

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BiocFileCache biomaRt

updated 3.5 years ago by Martin Morgan 25k • written 3.5 years ago by ZheFrench ▴ 60

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997

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BiocFileCache

updated 4.1 years ago by Mike Smith ★ 6.6k • written 4.1 years ago by pierrick.roger • 0

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tximeta BiocFileCache

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by judith.risse • 0

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1.6k

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BiocFileCache AnnotationHub ExperimentHub cache

4.6 years ago shepherl 4.2k

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1.1k

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BiocFileCache

updated 5.7 years ago by shepherl 4.2k • written 5.7 years ago by Qiang ▴ 80

9 results • Page 1 of 1

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Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

Comment: bake() and cool() resulting in an empty table by Francesc • 0

Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…

Votes

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

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