Bioconductor Biocupgrade

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Logolas old-version BiocUpgrade

updated 6.6 years ago by James W. MacDonald 67k • written 6.6 years ago by Kushal K Dey ▴ 10

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bioclite biocupgrade

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by dan.gatti • 0

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7.2k

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bioconductor biocupgrade upgrade update bioclite

8.6 years ago enricoferrero ▴ 660

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GenomicRanges biocupgrade

updated 8.7 years ago by Dan Tenenbaum ★ 8.2k • written 8.7 years ago by Vinicius Henrique da Silva ▴ 40

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bioconductor biocupgrade

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by laksharikrish • 0

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biocinstaller biocupgrade

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by ail27 • 0

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BiocUpgrade Rstudio Bioconductor R3.2.2

9.1 years ago svlachavas ▴ 840

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2.0k

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bioclite biocinstaller biocupgrade

updated 10.1 years ago by Dan Tenenbaum ★ 8.2k • written 10.1 years ago by Simon Coetzee ▴ 50

8 results • Page 1 of 1

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by yinhjk602 • 0

https://sprunkiphase4.net/ Sprunki Phase 4 is the latest update in the music rhythm game, offering new beats, characters, and challenges. Y…

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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