Bioconductor Biocupgrade

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Logolas old-version BiocUpgrade

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by Kushal K Dey ▴ 10

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1.4k

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bioclite biocupgrade

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by dan.gatti • 0

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7.3k

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bioconductor biocupgrade upgrade update bioclite

8.8 years ago enricoferrero ▴ 680

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1.8k

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GenomicRanges biocupgrade

updated 8.9 years ago by Dan Tenenbaum ★ 8.2k • written 8.9 years ago by Vinicius Henrique da Silva ▴ 40

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2.0k

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bioconductor biocupgrade

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by laksharikrish • 0

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1.4k

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biocinstaller biocupgrade

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by ail27 • 0

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29k

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BiocUpgrade Rstudio Bioconductor R3.2.2

9.3 years ago svlachavas ▴ 840

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2.1k

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bioclite biocinstaller biocupgrade

updated 10.3 years ago by Dan Tenenbaum ★ 8.2k • written 10.3 years ago by Simon Coetzee ▴ 50

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Comment: Using tximport for kallisto aligned recount2 data by ATpoint ★ 4.7k

recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?

Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package by Yao Lipu • 0

Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!

Answer: Surprising behavior for DEXseq dispersion estimate plot? by Snow • 0

Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…

Answer: library org.Hs.eg.db failing to install by James W. MacDonald 68k

It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0

Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…

Votes

Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms

A: WGCNA sample size minimum: why?

WGCNA sample size minimum: why?

Answer: Surprising behavior for DEXseq dispersion estimate plot?

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Popular Question to ramiro.barrantes ▴ 10