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biocupgrade
•
reset
8
votes
4
replies
6.9k
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Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
6
votes
2
replies
1.8k
views
BiocUpgrade without being promped to confirm
bioclite
biocinstaller
biocupgrade
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Simon Coetzee
▴ 50
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
8.5 years ago
svlachavas
▴ 830
2
votes
1
reply
1.6k
views
Update bioconductor in R 3.2.4
GenomicRanges
biocupgrade
updated 8.1 years ago by
Dan Tenenbaum
★ 8.2k • written 8.1 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
4
replies
1.7k
views
Error in upgrading bioconductor
bioconductor
biocupgrade
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
laksharikrish
• 0
0
votes
1
reply
1.2k
views
Upgrading bioconductor - how do I change the contrib.url?
biocinstaller
biocupgrade
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
ail27
• 0
0
votes
2
replies
1.2k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite
biocupgrade
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
dan.gatti
• 0
0
votes
1
reply
616
views
Older version is broken. How to remove it or update it?
Logolas
old-version
BiocUpgrade
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
Kushal K Dey
▴ 10
8 results • Page
1 of 1
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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