Showing : biomaRt • reset
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biomaRt access for NCBIM37 build of mouse genome
biomaRt biomaRt
updated 12.8 years ago by ▴ 400 • written 12.8 years ago by ▴ 210
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
12.9 years ago Julie Zhu ★ 4.3k
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1
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1.5k
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Cannot connect to unimart using biomaRt
biomaRt biomaRt
updated 12.9 years ago by ▴ 90 • written 12.9 years ago by ★ 13k
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1
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1.8k
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Retrieving dN, dS from biomaRt fails: Attributes from multiple pages not allowed
biomaRt biomaRt
updated 12.9 years ago by 68k • written 12.9 years ago by ★ 13k
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easyRNASeq read counts varying when recounting same sample!
Annotation GO biomaRt easyRNASeq Annotation GO biomaRt easyRNASeq
12.9 years ago delhomme@embl.de ★ 1.2k
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easyRNASeq read counts varying when recounting same sample!
biomaRt easyRNASeq biomaRt easyRNASeq
12.9 years ago René ▴ 40
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2
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2.5k
views
Extracting strand information from GenomicFeatures transcript db objects
TranscriptDb biomaRt TranscriptDb biomaRt
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 100
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0
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Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
12.9 years ago florian.hahne@novartis.com ★ 1.6k
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BiomaRt: getLDS keeps returning NULL
mouse4302 probe affy biomaRt mouse4302 probe affy biomaRt
updated 13.0 years ago by ▴ 540 • written 13.0 years ago by ▴ 110
2
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1
reply
4.8k
views
biomaRt query: retrieve exon locations etc
biomaRt biomaRt
updated 13.0 years ago by ▴ 540 • written 13.0 years ago by ★ 1.1k
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0
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1.1k
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biomaRt error
SNP biomaRt SNP biomaRt
13.0 years ago Christopher T Gregg ▴ 210
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2
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2.2k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt zebrafish biomaRt
updated 13.0 years ago by ★ 1.6k • written 13.0 years ago by ★ 13k
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2
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1.8k
views
geneid to gene name conversion
VariantAnnotation convert biomaRt VariantAnnotation VariantAnnotation convert biomaRt
updated 13.0 years ago by ▴ 750 • written 13.0 years ago by ▴ 10
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2
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3.2k
views
biomaRt does not load archived Ensembl Genes database anymore.
GO biomaRt Vega GO biomaRt Vega
updated 13.0 years ago by ▴ 540 • written 13.0 years ago by ▴ 20
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3
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1.7k
views
Problem with biomaRt update in R-2.15.1
biomaRt biomaRt
updated 13.0 years ago by 68k • written 13.0 years ago by ★ 13k
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2
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2.2k
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getSequence from biomaRt changes the order of sequences given as input - is it normal?
Yeast biomaRt Yeast biomaRt
updated 13.0 years ago by ▴ 540 • written 13.0 years ago by ▴ 270
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2
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2.5k
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biomaRt and RCurl
biomaRt biomaRt
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 10
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1
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1.3k
views
trouble with installing biomaRt in R-2.15
biomaRt biomaRt
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 190
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3
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2.5k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 biomaRt mouse4302 biomaRt
updated 13.1 years ago by ▴ 10 • written 13.1 years ago by ★ 13k
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1
reply
931
views
how to find sequence and promoters
biomaRt biomaRt
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 50
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4
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4.1k
views
rs ids Retrieval using biomaRt
SNP biomaRt SNP biomaRt
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 760
0
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1
reply
1.0k
views
Old Annotation Packages?
biomaRt biomaRt
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 260
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0
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1.3k
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biomaRt for COSMIC: frequency of mutation
biomaRt biomaRt
13.3 years ago Eleonora Lusito ▴ 40
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0
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1.2k
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help with biomaRt bioconductor - Filter upstream_flank NOT FOUND problem
Network biomaRt Network biomaRt
13.3 years ago Stefan Kroeger ▴ 10
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2
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2.0k
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creating GSEA files using biomart
affy biomaRt affy biomaRt
updated 13.3 years ago by ▴ 540 • written 13.3 years ago by ▴ 360
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2
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1.3k
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Cannot construct AnnotationDb for GOStats
GO affy GOstats biomaRt GO affy GOstats biomaRt
13.4 years ago wrighth ▴ 260
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3
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4.9k
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biomart database version problem
Annotation biomaRt Annotation biomaRt
updated 13.4 years ago by ▴ 540 • written 13.4 years ago by ▴ 40
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0
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1.2k
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ChIPpeakAnno to find peaks nearest to miRNA
miRNA Annotation GO BSgenome biomaRt BSgenome ChIPpeakAnno miRNA Annotation GO BSgenome
13.4 years ago Julie Zhu ★ 4.3k
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3
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2.4k
views
help with biomaRt bioconductor - Filter upstream_flank NOT FOUND problem
biomaRt biomaRt
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 10
0
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1
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1.6k
views
biomaRt 'Please report this to the mailing list'
PROcess biomaRt PROcess biomaRt
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 170
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11
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3.3k
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Problems in retrieving 3'UTR sequences of ALL human genes using biomaRt
biomaRt biomaRt
updated 13.5 years ago by ★ 1.1k • written 13.5 years ago by ▴ 200
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3
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1.3k
views
BiomaRt - Flanking regions
biomaRt biomaRt
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 760
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1
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1.3k
views
Help with GSEAlm
biomaRt GSEAlm biomaRt GSEAlm
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 20
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2
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1.1k
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BiomaRt Details
biomaRt biomaRt
updated 13.6 years ago by ▴ 540 • written 13.5 years ago by ▴ 760
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0
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[Engineers for ensemblgenomes.org #251937] BioMart data anomaly: for some transcripts, the cds cumulative length inferred from the exon and UTR info …
Drosophila melanogaster TranscriptDb biomaRt GenomicFeatures genomes Drosophila melanogaster
13.6 years ago Malcolm Cook ★ 1.6k
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2
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4.9k
views
biomaRt installation error ??
biomaRt biomaRt
updated 13.6 years ago by ▴ 280 • written 13.6 years ago by ▴ 440
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2
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994
views
understanding multiples matches between probesets and entrezgene (biomart)
biomaRt biomaRt
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 360
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7
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2.2k
views
makeTranscriptDbFromBiomart error
biomaRt biomaRt
13.6 years ago Stefanie ▴ 360
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1
reply
1.1k
views
BiomaRt Query error Edited
SNP biomaRt SNP biomaRt
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 760
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0
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926
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BiomaRt query error
SNP biomaRt SNP biomaRt
13.6 years ago Voke AO ▴ 760
0
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0
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1.5k
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biomart error returning data
GO biomaRt GO biomaRt
13.6 years ago Guest User ★ 13k
0
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4
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1.7k
views
Genes to SNPs Tool
biomaRt biomaRt
updated 13.6 years ago by ▴ 80 • written 13.6 years ago by ▴ 760
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0
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1.6k
views
BiomaRt error: server down?
biomaRt biomaRt
13.7 years ago Lisa Hopcroft ▴ 40
0
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0
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1.0k
views
BiomaRt returns empty set for getBM for celegans miRNA
biomaRt biomaRt
13.7 years ago Julie Zhu ★ 4.3k
0
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2
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3.4k
views
Problem using biomaRt to retrieve human SNPs given a list of gene symbols
biomaRt biomaRt
updated 13.7 years ago by ▴ 340 • written 13.7 years ago by ▴ 80
0
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1
reply
1.4k
views
RCurl problem
biomaRt biomaRt
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 620
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5
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3.7k
views
retrieve gene symbol/description
biomaRt biomaRt
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 420
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0
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1.7k
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[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt genomes Cancer Organism biomaRt genomes
13.8 years ago Malcolm Cook ★ 1.6k
0
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2
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5.5k
views
problem with 'biomaRt' package installation: Error in loadNamespace(i, c(lib.loc, .libPaths()))
biomaRt biomaRt
updated 13.8 years ago by ★ 8.2k • written 13.8 years ago by ▴ 60
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2
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1.1k
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Problems installing Genominator and GenomeGraphs
biomaRt biomaRt
updated 13.8 years ago by ★ 8.2k • written 13.8 years ago by ★ 13k
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Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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