Showing : brain • reset
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2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.9 years ago by ▴ 210 • written 12.9 years ago by ▴ 110
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9
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frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.8 years ago by ▴ 830 • written 9.8 years ago by ★ 13k
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Tukey\'s HSD after ANOVA
GO BRAIN GO BRAIN
11.0 years ago Guest User ★ 13k
1
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2
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1.9k
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How to proceed with different degradation levels of RNA-seq samples?
degradation RNA-seq variability differential expression brain
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 90
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4
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1.7k
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allen brain atlas
Genetics Annotation BRAIN Genetics Annotation BRAIN
updated 15.7 years ago by 25k • written 15.7 years ago by ▴ 60
0
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1
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1.7k
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Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
updated 13.1 years ago by ▴ 80 • written 13.1 years ago by ▴ 620
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7
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1.6k
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EBS volumes with the Bioconductor AMI: how to change default behaviour
PROcess BRAIN PROcess BRAIN
12.8 years ago Dan Tenenbaum ★ 8.2k
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2
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1.5k
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new topGO results using GO.db very different from old ones using GO
GO annotate topGO BRAIN GO annotate topGO BRAIN
updated 16.0 years ago by ▴ 400 • written 16.0 years ago by ▴ 730
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0
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1.5k
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New Alzheimer's disease microarray data set available
Microarray BRAIN Microarray BRAIN
19.8 years ago Eric Blalock ▴ 250
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4
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1.5k
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microarray analysis of a dose response * strain experiment
affy DOSE BRAIN affy DOSE BRAIN
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 890
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3
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1.4k
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human tissue specific genes
BRAIN BRAIN
updated 19.8 years ago by 21k • written 19.8 years ago by ▴ 80
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Job reminder: Open position for a Core Bioinformatician in Lund, Sweden
Microarray BRAIN Microarray BRAIN
10.8 years ago _Bio - Informatics ▴ 20
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3
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1.4k
views
LIMMA lmscFit: difference between linear models
BRAIN BRAIN
18.6 years ago Koen Bossers ▴ 20
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5
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1.3k
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P-values for tissue specific genes
BRAIN BRAIN
15.8 years ago Pascal Gellert ▴ 30
0
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1
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1.3k
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Cluster analysis distance measuer
Microarray Annotation Normalization Clustering Cancer affy limma AnnBuilder BRAIN Cancer
updated 19.5 years ago by ▴ 110 • written 19.5 years ago by ▴ 250
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3
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1.3k
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How to filter a list of SNPs?
BRAIN BRAIN
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 450
0
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1
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1.3k
views
Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 3.3 years ago by 50k • written 15.5 years ago by ▴ 10
0
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3
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1.2k
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problems with paired design in limma
Microarray BRAIN Microarray BRAIN
15.5 years ago Michael Walter ▴ 160
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2
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1.2k
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EBS volumes with the Bioconductor AMI: how to change default behaviour
BRAIN BRAIN
12.8 years ago Quin Wills ▴ 80
0
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1
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1.2k
views
log2 and rowMeans a problem?
BRAIN BRAIN
updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 20
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1
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1.2k
views
Three tenure track assistant professorship openings at Inst. Behavioral Genetics, University of Colorado Boulder
Genetics BRAIN Genetics BRAIN
12.1 years ago Matthew Keller ▴ 100
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1
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1.2k
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[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 12.6 years ago by ▴ 340 • written 12.6 years ago by ▴ 30
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3
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1.2k
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edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 11.8 years ago by 25k • written 11.8 years ago by 50k
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0
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1.2k
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edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
11.8 years ago alessandro.guffanti@genomnia.com ▴ 330
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3
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1.2k
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Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
Microarray BRAIN Microarray BRAIN
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ▴ 40
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0
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1.2k
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microarray analysis of a dose response * strain experiment
Microarray affy limma maSigPro DOSE BRAIN Microarray affy limma maSigPro DOSE BRAIN
17.5 years ago Naomi Altman ★ 6.0k
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1
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1.1k
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CAGEr - How to change plot axis range in CAGEr
BRAIN CAGEr BRAIN CAGEr
updated 6.0 years ago by ▴ 180 • written 9.8 years ago by ▴ 10
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0
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Open position for a Core Bioinformatician in Lund, Sweden
Microarray BRAIN Microarray BRAIN
10.8 years ago _Bio - Informatics ▴ 20
0
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1
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1.1k
views
new lumi and miRNA array data
Microarray Normalization lumi BRAIN Microarray Normalization lumi BRAIN
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 830
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1
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1.1k
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GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 18.3 years ago by ★ 2.0k • written 18.3 years ago by ▴ 20
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Undergraduate Student Project Summer 2007, at EBI: the synapse and the brain
Pathways BRAIN Pathways BRAIN
17.2 years ago Wolfgang Huber ★ 13k
0
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3
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1.0k
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limma design matrix
affy BRAIN affy BRAIN
updated 19.3 years ago by ▴ 720 • written 19.3 years ago by ▴ 250
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0
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994
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Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
13.4 years ago Pan Du ★ 1.2k
0
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0
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938
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4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.7 years ago k. brand ▴ 420
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0
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933
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Error in example from biomaRt vignette
biomaRt BRAIN biomaRt BRAIN
11.0 years ago Steffen Durinck ▴ 90
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1
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929
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[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 12.6 years ago by ▴ 150 • written 12.6 years ago by ▴ 30
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890
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help with limma contrast matrix
BRAIN BRAIN
19.5 years ago Kimpel, Mark W ▴ 890
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0
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883
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What is the difference of layout between genepix scanner & agilent scanner
limma BRAIN limma BRAIN
12.6 years ago 이선재 ▴ 30
0
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0
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844
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Q-value package now available
BRAIN BRAIN
20.4 years ago Warnes, Gregory R ▴ 460
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0
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832
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Re: NormalizeForPrintorder
BRAIN BRAIN
20.9 years ago Gordon Smyth 50k
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830
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The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways PROcess BRAIN Pathways PROcess BRAIN
16.8 years ago Neddy ▴ 10
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Re: Additional questions regarding LIMMA
Normalization BRAIN Normalization BRAIN
20.9 years ago Gordon Smyth 50k
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0
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822
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Re: LIMMA
Normalization BRAIN ASSIGN Normalization BRAIN ASSIGN
20.9 years ago Gordon Smyth 50k
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812
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Job: Data science research assistant position at Johns Hopkins
RNAseq R Next-Gen Sequencing Imaging Brain Job
5.1 years ago hjaarop1 • 0
0
votes
0
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806
views
Creating a model matrix for three age groups using two-colour arrays
Microarray limma BRAIN Microarray limma BRAIN
15.5 years ago Gordon Smyth 50k
0
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0
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800
views
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
15.2 years ago Gordon Smyth 50k
0
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0
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791
views
read.maimages broken (limma 2.9.10)?
limma BRAIN limma BRAIN
17.2 years ago Gordon Smyth 50k
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0
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778
views
read.maimages broken (limma 2.9.10)?
BRAIN BRAIN
17.2 years ago Koen Bossers ▴ 10
0
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0
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775
views
How to: design matrices for multi organism parts experiment
Organism BRAIN Organism BRAIN
13.0 years ago Hans ▴ 10
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0
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769
views
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
15.3 years ago Dmitriy Verkhoturov ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma by Gordon Smyth 50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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