Bioconductor Bsgenome

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BSgenome

updated 8 weeks ago by James W. MacDonald 65k • written 11 weeks ago by Kate • 0

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520

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OrgDb BSgenome

6 months ago • updated 11 weeks ago mat149 ▴ 70

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578

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SNPlocs BSgenome

written 6 months ago by Stevie Pederson • 0

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680

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 10 months ago by ATpoint ★ 4.0k • written 10 months ago by Lillian • 0

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924

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BSgenomeForge BSgenome

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by kyliecode • 0

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731

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bsgenome GenomicFeatures package

updated 10 months ago by Hervé Pagès 16k • written 11 months ago by Manish • 0

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853

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BSgenome

updated 3 months ago by eviatar.weizman • 0 • written 24 months ago by remerandmaxence ▴ 10

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

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Scholar to James W. MacDonald 65k

Supporter to JKim • 0